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Viral evolution

Genome Sequencing and Phylogenetic Analysis of 39 Human Parainfluenza Virus Type 1 Strains Isolated from 1997–2010

Eric T. Beck, Jie He, [ ... ], Kelly J. Henrickson

Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

Guinevere Q. Lee, Luke C. Swenson, [ ... ], P. Richard Harrigan

Amino Acids Transitioning of 2009 H1N1pdm in Taiwan from 2009 to 2011

Guang-Wu Chen, Kuo-Chien Tsao, [ ... ], Shin-Ru Shih

Phylogenetic Properties of RNA Viruses

Simone Pompei, Vittorio Loreto, Francesca Tria

Human Immunodeficiency Virus Type-1 (HIV-1) Continues to Evolve in Presence of Broadly Neutralizing Antibodies More than Ten Years after Infection

Antoine Chaillon, Martine Braibant, [ ... ], Francis Barin

Molecular Evolutionary Analysis of pH1N1 2009 Influenza Virus in Reunion Island, South West Indian Ocean Region: A Cohort Study

Hervé Pascalis, Sarah Temmam, [ ... ], Koussay Dellagi

Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution

Olga V. Kalinina, Heike Oberwinkler, [ ... ], John A. G. Briggs

Discovery of Novel dsRNA Viral Sequences by In Silico Cloning and Implications for Viral Diversity, Host Range and Evolution

Huiquan Liu, Yanping Fu, [ ... ], Daohong Jiang

Development of Elvitegravir Resistance and Linkage of Integrase Inhibitor Mutations with Protease and Reverse Transcriptase Resistance Mutations

Mark A. Winters, Robert M. Lloyd Jr., [ ... ], Mark Holodniy

Compensatory Evolution of Net-Charge in Influenza A Virus Hemagglutinin

Yuki Kobayashi, Yoshiyuki Suzuki

Characterization of Bean Necrotic Mosaic Virus: A Member of a Novel Evolutionary Lineage within the Genus Tospovirus

Athos Silva de Oliveira, Fernando Lucas Melo, [ ... ], Renato Oliveira Resende

Analysis of C3 Suggests Three Periods of Positive Selection Events and Different Evolutionary Patterns between Fish and Mammals

Fanxing Meng, Yuena Sun, [ ... ], Rixin Wang

Using Knowledge Fusion to Analyze Avian Influenza H5N1 in East and Southeast Asia

Erjia Ge, Robert Haining, [ ... ], Yee Leung

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