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Viral evolution

Acute Phase CD8+ T Lymphocytes against Alternate Reading Frame Epitopes Select for Rapid Viral Escape during SIV Infection

Andrew D. Walsh, Benjamin N. Bimber, [ ... ], Nicholas J. Maness

Novel Phylogenetic Algorithm to Monitor Human Tropism in Egyptian H5N1-HPAIV Reveals Evolution toward Efficient Human-to-Human Transmission

Vladimir R. Perovic, Claude P. Muller, [ ... ], Veljko Veljkovic

On Hepatitis C Virus Evolution: The Interaction between Virus and Host towards Treatment Outcome

Cíntia Bittar, Ana Carolina Gomes Jardim, [ ... ], Paula Rahal

In Vitro HIV-1 Evolution in Response to Triple Reverse Transcriptase Inhibitors & In Silico Phenotypic Analysis

Barbara A. Rath, Kaveh Pouran Yousef, [ ... ], Thomas C. Merigan

Exploring the Molecular Epidemiology and Evolutionary Dynamics of Influenza A Virus in Taiwan

Jih-Hui Lin, Shu-Chun Chiu, [ ... ], Hsin-Fu Liu

Mean Protein Evolutionary Distance: A Method for Comparative Protein Evolution and Its Application

Michael J. Wise

Epidemiology and Evolution of Rotaviruses and Noroviruses from an Archival WHO Global Study in Children (1976–79) with Implications for Vaccine Design

Lauren A. Rackoff, Karin Bok, Kim Y. Green, Albert Z. Kapikian

Complete Genome Analysis of the C4 Subgenotype Strains of Enterovirus 71: Predominant Recombination C4 Viruses Persistently Circulating in China for 14 Years

Yan Zhang, Xiaojuan Tan, [ ... ], Wenbo Xu

Phylogenetic Analysis of Enterovirus 71 Circulating in Beijing, China from 2007 to 2009

Junping Zhu, Zhen Luo, [ ... ], Jing An

Phylogenetic and Molecular Epidemiological Studies Reveal Evidence of Multiple Past Recombination Events between Infectious Laryngotracheitis Viruses

Sang-Won Lee, Joanne M. Devlin, [ ... ], Philip F. Markham

Role of Baseline HIV-1 DNA Level in Highly-Experienced Patients Receiving Raltegravir, Etravirine and Darunavir/Ritonavir Regimen (ANRS139 TRIO Trial)

Charlotte Charpentier, Catherine Fagard, [ ... ], the ANRS139 TRIO Trial study group

Whole Genome Characterization, Phylogenetic and Genome Signature Analysis of Human Pandemic H1N1 Virus in Thailand, 2009–2012

Jarika Makkoch, Kamol Suwannakarn, [ ... ], Yong Poovorawan

Genetic Variability among Complete Human Respiratory Syncytial Virus Subgroup A Genomes: Bridging Molecular Evolutionary Dynamics and Epidemiology

Lydia Tan, Philippe Lemey, [ ... ], Frank E. Coenjaerts

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