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Viral evolution

HIV-1 Clade B pol Evolution following Primary Infection

George K. Hightower, Susanne J. May, Josué Pérez-Santiago, Mary E. Pacold, Gabriel A. Wagner, Susan J. Little, Douglas D. Richman, Sanjay R. Mehta, Davey M. Smith, Sergei L. Kosakovsky Pond

published 28 Jun 2013

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Evolution of Type 2 Vaccine Derived Poliovirus Lineages. Evidence for Codon-Specific Positive Selection at Three Distinct Locations on Capsid Wall

Tapani Hovi, Carita Savolainen-Kopra, Teemu Smura, Soile Blomqvist, Haider Al-Hello, Merja Roivainen

published 28 Jun 2013

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Sequencing of the Hepatitis C Virus: A Systematic Review

Brendan Jacka, Francois Lamoury, Peter Simmonds, Gregory J. Dore, Jason Grebely, Tanya Applegate

published 27 Jun 2013

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An Experimental and Computational Evolution-Based Method to Study a Mode of Co-evolution of Overlapping Open Reading Frames in the AAV2 Viral Genome

Yasuhiro Kawano, Shane Neeley, Kei Adachi, Hiroyuki Nakai

published 24 Jun 2013

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Emergence and Phylodynamics of Citrus tristeza virus in Sicily, Italy

Salvatore Davino, Anouk Willemsen, Stefano Panno, Mario Davino, Antonino Catara, Santiago F. Elena, Luis Rubio

published 20 Jun 2013

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The Evolutionary Rates of HCV Estimated with Subtype 1a and 1b Sequences over the ORF Length and in Different Genomic Regions

Manqiong Yuan, Teng Lu, Chunhua Li, Ling Lu

published 06 Jun 2013

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Molecular Epidemiology and Phylodynamics of the Human Respiratory Syncytial Virus Fusion Protein in Northern Taiwan

Hsin Chi, Hsin-Fu Liu, Li-Chuan Weng, Nai-Yu Wang, Nan-Chang Chiu, Mei-Ju Lai, Yung-Cheng Lin, Yu-Ying Chiu, Wen-Shyang Hsieh, Li-Min Huang

published 29 May 2013

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Model-Selection-Based Approach for Calculating Cellular Multiplicity of Infection during Virus Colonization of Multi-Cellular Hosts

Mark P. Zwart, Nicolas Tromas, Santiago F. Elena

published 28 May 2013

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Dengue Virus Type 3 Adaptive Changes during Epidemics in São Jose de Rio Preto, Brazil, 2006–2007

Christian Julian Villabona-Arenas, Adriano Mondini, Irene Bosch, Diane Schimitt, Carlos E. Calzavara-Silva, Paolo M. de A Zanotto, Maurício L. Nogueira

published 07 May 2013

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Acute Phase CD8+ T Lymphocytes against Alternate Reading Frame Epitopes Select for Rapid Viral Escape during SIV Infection

Andrew D. Walsh, Benjamin N. Bimber, Arpita Das, Shari M. Piaskowski, Eva G. Rakasz, Alexander T. Bean, Philip A. Mudd, Adam J. Ericsen, Nancy A. Wilson, Austin L. Hughes, David H. O'Connor, Nicholas J. Maness

published 06 May 2013

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Novel Phylogenetic Algorithm to Monitor Human Tropism in Egyptian H5N1-HPAIV Reveals Evolution toward Efficient Human-to-Human Transmission

Vladimir R. Perovic, Claude P. Muller, Henry L. Niman, Nevena Veljkovic, Ursula Dietrich, Dusan D. Tosic, Sanja Glisic, Veljko Veljkovic

published 26 Apr 2013

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On Hepatitis C Virus Evolution: The Interaction between Virus and Host towards Treatment Outcome

Cíntia Bittar, Ana Carolina Gomes Jardim, Lilian Hiromi Tomonari Yamasaki, Claudia Márcia Aparecida Carareto, João Renato Rebello Pinho, Philippe Lemey, Isabel Maria Vicente Guedes de Carvalho-Mello, Paula Rahal

published 25 Apr 2013

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In Vitro HIV-1 Evolution in Response to Triple Reverse Transcriptase Inhibitors & In Silico Phenotypic Analysis

Barbara A. Rath, Kaveh Pouran Yousef, David K. Katzenstein, Robert W. Shafer, Christof Schütte, Max von Kleist, Thomas C. Merigan

published 17 Apr 2013

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