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Viral evolution

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, Wallace Bulimo, Johnson Kinyua, Santos Yalwala, Luis Pow Sang, Haynes Robert, Gerald G. Kellar, John Eads, Fredrick Eyase

published 13 Oct 2025

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Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, Ginger Geiger, Daniel R. Perez, Daniela S. Rajao

published 13 Aug 2025

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Deciphering the genetic landscape of tomato leaf curl New Delhi virus: Dynamic and region-specific diversity revealed by comprehensive sequence analyses

Zafar Iqbal, Adil Alshoaibi, Sallah Ahmad Al Hashedi, Muhammad Naeem Sattar, Khaled Muhammad Amin Ramadan

published 17 Jul 2025

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Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

published 09 Jun 2025

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Whole genome sequencing and molecular detection of potato virus X in Bangladesh

Md. Shafiqul Islam, Md. Akash Ahammed, Fahmida Akhter, Mosaddiqur Rahman, Md. Mosharraf Hossain Molla

published 08 May 2025

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Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

published 28 Apr 2025

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Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

published 07 Apr 2025

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Microevolution and phylogenomic study of Respiratory Syncytial Virus type A

Ashfaq Ahmad, Sidra Majaz, Aamir Saeed, Shumaila Noreen, Muhammad Abbas, Bilal Khan, Hamid Ur Rahman, Faisal Nouroz, Yingqiu Xie, Abdur Rashid, Atta Ur Rehman

published 25 Feb 2025

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Whole-genome sequence analysis of SFTS bunyavirus in Huzhou, China

Deshun Xu, Lei Ji, Xiaofang Wu, Liping Chen

published 11 Feb 2025

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The evolutionary and transmission dynamics of HIV-1 CRF08_BC

Xingguang Li, Nídia S. Trovão

published 06 Sep 2024

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Characterization of West Nile virus Koutango lineage from phlebotomine sandflies in Kenya

Jane Wambui Thiiru, Solomon Langat, Francis Mulwa, Stephanie Cinkovich, Hellen Koka, Santos Yalwala, Samoel Khamadi, Justus Onguso, Nicholas Odemba, Francis Ngere, Jaree Johnson, Timothy Egbo, Eric Garges, Elly Ojwang, Fredrick Eyase

published 22 Aug 2024

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Research on the evolution of cross-platform online public opinion for public health emergencies considering stakeholders

Yan Shen, Zhou Luo, Xinping Song, Chunhua Liu

published 25 Jun 2024

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