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Viral evolution

Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, [ ... ], on behalf of the Italian Genomic Laboratory Network

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, [ ... ], Marc Stegger

Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, [ ... ], Fredrick Eyase

Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, [ ... ], Daniela S. Rajao

Deciphering the genetic landscape of tomato leaf curl New Delhi virus: Dynamic and region-specific diversity revealed by comprehensive sequence analyses

Zafar Iqbal, Adil Alshoaibi, [ ... ], Khaled Muhammad Amin Ramadan

Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

Whole genome sequencing and molecular detection of potato virus X in Bangladesh

Md. Shafiqul Islam, Md. Akash Ahammed, [ ... ], Md. Mosharraf Hossain Molla

Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

Microevolution and phylogenomic study of Respiratory Syncytial Virus type A

Ashfaq Ahmad, Sidra Majaz, [ ... ], Atta Ur Rehman

Whole-genome sequence analysis of SFTS bunyavirus in Huzhou, China

Deshun Xu, Lei Ji, Xiaofang Wu, Liping Chen

The evolutionary and transmission dynamics of HIV-1 CRF08_BC

Xingguang Li, Nídia S. Trovão

Characterization of West Nile virus Koutango lineage from phlebotomine sandflies in Kenya

Jane Wambui Thiiru, Solomon Langat, [ ... ], Fredrick Eyase

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