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Viral evolution

Calculation of Evolutionary Correlation between Individual Genes and Full-Length Genome: A Method Useful for Choosing Phylogenetic Markers for Molecular Epidemiology

Shuai Wang, Xuenong Luo, Wei Wei, Yadong Zheng, Yongxi Dou, Xuepeng Cai

published 03 Dec 2013

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Bayesian Inference of the Evolution of HBV/E

Iris E. Andernach, Oliver E. Hunewald, Claude P. Muller

published 29 Nov 2013

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Synonymous Codon Usage in TTSuV2: Analysis and Comparison with TTSuV1

Zhicheng Zhang, Wei Dai, Dingzhen Dai

published 26 Nov 2013

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Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome

Samantha Warren, Xiu-Feng Wan, Gavin Conant, Dmitry Korkin

published 25 Nov 2013

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Identification of a Cluster of HIV-1 Controllers Infected with Low Replicating Viruses

Concepción Casado, Maria Pernas, Virginia Sandonis, Tamara Alvaro-Cifuentes, Isabel Olivares, Rosa Fuentes, Lorena Martínez-Prats, Eulalia Grau, Lidia Ruiz, Rafael Delgado, Carmen Rodríguez, Jorge del Romero, Cecilio López-Galíndez

published 30 Oct 2013

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Variation of Transaminases, HCV-RNA Levels and Th1/Th2 Cytokine Production during the Post-Partum Period in Pregnant Women with Chronic Hepatitis C

Ángeles Ruiz-Extremera, José Antonio Muñoz-Gámez, Ana Abril-Molina, María Angustias Salmerón-Ruiz, Paloma Muñoz-de-Rueda, Esther José Pavón-Castillero, Rosa Quiles-Pérez, Ángel Carazo, Ana Gila, Sergio Manuel Jimenez-Ruiz, Jorge Casado, Ana Belén Martín, Laura Sanjuán-Núñez, Esther Ocete-Hita, Julián López Viota, Josefa León, Javier Salmerón

published 10 Oct 2013

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Structural Differences between the Avian and Human H7N9 Hemagglutinin Proteins Are Attributable to Modifications in Salt Bridge Formation: A Computational Study with Implications in Viral Evolution

Marni E. Cueno, Kenichi Imai, Muneaki Tamura, Kuniyasu Ochiai

published 07 Oct 2013

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Quantifying the Fitness Advantage of Polymerase Substitutions in Influenza A/H7N9 Viruses during Adaptation to Humans

Judith M. Fonville, David F. Burke, Nicola S. Lewis, Leah C. Katzelnick, Colin A. Russell

published 27 Sep 2013

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Multiple Genomic Recombination Events in the Evolution of Saffold Cardiovirus

Lili Ren, Yan Xiao, Jianguo Li, Lan Chen, Jing Zhang, Guy Vernet, Jianwei Wang

published 23 Sep 2013

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Application of Motif-Based Tools on Evolutionary Analysis of Multipartite Single-Stranded DNA Viruses

Hsiang-Iu Wang, Chih-Hung Chang, Po-Heng Lin, Hui-Chuan Fu, ChuanYi Tang, Hsin-Hung Yeh

published 06 Aug 2013

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Comprehensive Phylogenetic Reconstructions of African Swine Fever Virus: Proposal for a New Classification and Molecular Dating of the Virus

Vincent Michaud, Tantely Randriamparany, Emmanuel Albina

published 25 Jul 2013

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Evolutionary Invasion and Escape in the Presence of Deleterious Mutations

Claude Loverdo, James O. Lloyd-Smith

published 17 Jul 2013

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Bioinformatics of Recent Aqua- and Orthoreovirus Isolates from Fish: Evolutionary Gain or Loss of FAST and Fiber Proteins and Taxonomic Implications

Max L. Nibert, Roy Duncan

published 04 Jul 2013

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