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Viral evolution

Chasing the Origin of Viruses: Capsid-Forming Genes as a Life-Saving Preadaptation within a Community of Early Replicators

Matti Jalasvuori, Sari Mattila, Ville Hoikkala

published 08 May 2015

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Computational Characterization of Transient Strain-Transcending Immunity against Influenza A

David C. Farrow, Donald S. Burke, Roni Rosenfeld

published 01 May 2015

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Adaptive Evolution of Toll-Like Receptors (TLRs) in the Family Suidae

Kwame A. Darfour-Oduro, Hendrik-Jan Megens, Alfred L. Roca, Martien A. M. Groenen, Lawrence B. Schook

published 20 Apr 2015

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Natural Selection Causes Adaptive Genetic Resistance in Wild Emmer Wheat against Powdery Mildew at “Evolution Canyon” Microsite, Mt. Carmel, Israel

Huayan Yin, Yuval Ben-Abu, Hongwei Wang, Anfei Li, Eviatar Nevo, Lingrang Kong

published 09 Apr 2015

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Time-Calibrated Phylogenomics of the Classical Swine Fever Viruses: Genome-Wide Bayesian Coalescent Approach

Taehyung Kwon, Sook Hee Yoon, Kyu-Won Kim, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim

published 27 Mar 2015

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Rapid and Liquid-Based Selection of Genetic Switches Using Nucleoside Kinase Fused with Aminoglycoside Phosphotransferase

Masahiro Tominaga, Kohei Ike, Shigeko Kawai-Noma, Kyoichi Saito, Daisuke Umeno

published 19 Mar 2015

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High Frequency of Transmitted HIV-1 Gag HLA Class I-Driven Immune Escape Variants but Minimal Immune Selection over the First Year of Clade C Infection

Kamini Gounder, Nagavelli Padayachi, Jaclyn K. Mann, Mopo Radebe, Mammekwa Mokgoro, Mary van der Stok, Lungile Mkhize, Zenele Mncube, Manjeetha Jaggernath, Tarylee Reddy, Bruce D. Walker, Thumbi Ndung’u

published 17 Mar 2015

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New Insights into Flavivirus Evolution, Taxonomy and Biogeographic History, Extended by Analysis of Canonical and Alternative Coding Sequences

Gregory Moureau, Shelley Cook, Philippe Lemey, Antoine Nougairede, Naomi L. Forrester, Maxim Khasnatinov, Remi N. Charrel, Andrew E. Firth, Ernest A. Gould, Xavier de Lamballerie

published 26 Feb 2015

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Evidence That the Heterogeneity of a T4 Population Is the Result of Heritable Traits

Zachary J. Storms, Dominic Sauvageau

published 31 Dec 2014

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In Vitro Evolution and Affinity-Maturation with Coliphage Qβ Display

Claudia Skamel, Stephen G. Aller, Alain Bopda Waffo

published 13 Nov 2014

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Clinical Application of Estimating Hepatitis B Virus Quasispecies Complexity by Massive Sequencing: Correlation between Natural Evolution and On-Treatment Evolution

Maria Homs, Andrea Caballero, Josep Gregori, David Tabernero, Josep Quer, Leonardo Nieto, Rafael Esteban, Maria Buti, Francisco Rodriguez-Frias

published 13 Nov 2014

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Systematic CpT (ApG) Depletion and CpG Excess Are Unique Genomic Signatures of Large DNA Viruses Infecting Invertebrates

Mohita Upadhyay, Neha Sharma, Perumal Vivekanandan

published 04 Nov 2014

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CD8 and CD4 Epitope Predictions in RV144: No Strong Evidence of a T-Cell Driven Sieve Effect in HIV-1 Breakthrough Sequences from Trial Participants

Kalpana Dommaraju, Gustavo Kijak, Jonathan M. Carlson, Brendan B. Larsen, Sodsai Tovanabutra, Dan E. Geraghty, Wenjie Deng, Brandon S. Maust, Paul T. Edlefsen, Eric Sanders-Buell, Silvia Ratto-Kim, Mark S. deSouza, Supachai Rerks-Ngarm, Sorachai Nitayaphan, Punnee Pitisuttihum, Jaranit Kaewkungwal, Robert J. O'Connell, Merlin L. Robb, Nelson L. Michael, James I. Mullins, Jerome H. Kim, Morgane Rolland

published 28 Oct 2014

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