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Transposable elements

Decoding the genetic structure of conjugative plasmids in international clones of Klebsiella pneumoniae: A deep dive into bla_KPC, bla_NDM, bla_OXA-48, and bla_GES genes

Shadi Aghamohammad, Mahshid Khazani Asforooshani, Yeganeh Malek Mohammadi, Mohammad Sholeh, Farzad Badmasti

published 16 Nov 2023

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Importance of mobile genetic elements for dissemination of antimicrobial resistance in metagenomic sewage samples across the world

Markus H. K. Johansson, Frank M. Aarestrup, Thomas N. Petersen

published 19 Oct 2023

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Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks

Simon Orozco-Arias, Luis Humberto Lopez-Murillo, Johan S. Piña, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Luis Castillo-Ossa, Gustavo Isaza, Romain Guyot

published 21 Sep 2023

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Structure characteristics of mutation sites in two waxy alleles from Yunnan waxy maize (Zea mays L. var. certaina Kulesh) landraces

Tingting Sun, Xiaoyang Wu

published 08 Sep 2023

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Transposable element insertions in 1000 Swedish individuals

Kristine Bilgrav Saether, Daniel Nilsson, Håkan Thonberg, Emma Tham, Adam Ameur, Jesper Eisfeldt, Anna Lindstrand

published 28 Jul 2023

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Pan-genome survey of the fish pathogen Yersinia ruckeri links accessory- and amplified genes to virulence

Andreas Riborg, Snorre Gulla, Eve Zeyl Fiskebeck, David Ryder, David W. Verner-Jeffreys, Duncan J. Colquhoun, Timothy J. Welch

published 11 May 2023

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Enabling low-cost and robust essentiality studies with high-throughput transposon mutagenesis (HTTM)

Antoine Champie, Amélie De Grandmaison, Simon Jeanneau, Frédéric Grenier, Pierre-Étienne Jacques, Sébastien Rodrigue

published 11 Apr 2023

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Knockout of DDM1 in Physcomitrium patens disrupts DNA methylation with a minute effect on transposon regulation and development

Ofir Griess, Katherine Domb, Aviva Katz, Keith D. Harris, Karina G. Heskiau, Nir Ohad, Assaf Zemach

published 08 Mar 2023

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Drosophila melanogaster resilin improves the mechanical properties of transgenic silk

Shuo Zhao, Xiaogang Ye, Xiangping Dai, Xinqiu Wang, Shihua Yu, Boxiong Zhong

published 03 Mar 2023

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Investigating the origin of subtelomeric and centromeric AT-rich elements in Aspergillus flavus

Arthur J. Lustig

published 09 Feb 2023

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A large-scale genetic screen identifies genes essential for motility in Agrobacterium fabrum

Diana G. Calvopina-Chavez, Robyn E. Howarth, Audrey K. Memmott, Oscar H. Pech Gonzalez, Caleb B. Hafen, Kyson T. Jensen, Alex B. Benedict, Jessica D. Altman, Brittany S. Burnside, Justin S. Childs, Samuel W. Dallon, Alexa C. DeMarco, Kirsten C. Flindt, Sarah A. Grover, Elizabeth Heninger, Christina S. Iverson, Abigail K. Johnson, Jack B. Lopez, McKay A. Meinzer, Brook A. Moulder, Rebecca I. Moulton, Hyrum S. Russell, Tiana M. Scott, Yuka Shiobara, Mason D. Taylor, Kathryn E. Tippets, Kayla M. Vainerere, Isabella C. Von Wallwitz, Madison Wagley, Megumi S. Wiley, Naomi J. Young, Joel S. Griffitts

published 04 Jan 2023

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In vitro genome editing activity of Cas9 in somatic cells after random and transposon-based genomic Cas9 integration

Jenny-Helena Söllner, Hendrik Johannes Sake, Antje Frenzel, Rita Lechler, Doris Herrmann, Walter Fuchs, Björn Petersen

published 30 Dec 2022

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Identification of novel genes involved in the biofilm formation process of Avian Pathogenic Escherichia coli (APEC)

Meaghan M. Young, Aline L. de Oliveira, Lisa K. Nolan, Nicolle L. Barbieri, Catherine M. Logue

published 19 Dec 2022

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