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Transposable elements

Characterization and whole genome sequencing of Saccharomyces cerevisiae strains lacking several amino acid transporters: Tools for studying amino acid transport

Unnati Sonawala, Aymeric Busidan, David Haak, Guillaume Pilot

published 30 Apr 2025

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Comparative genomics of Mycobacterium avium subsp. hominissuis strains within a group of captive lowland tapirs

Hanka Brangsch, Sandra Marcordes, Anne Busch, Michael Weber, Silver A. Wolf, Torsten Semmler, Dirk Höper, Sten Calvelage, Jörg Linde, Stefanie A. Barth

published 01 Apr 2025

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Saturated Transposon Analysis in Yeast as a one-step method to quantify the fitness effects of gene disruptions on a genome-wide scale

Enzo Kingma, Floor Dolsma, Leila Iñigo de la Cruz, Liedewij Laan

published 06 Feb 2025

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A CACTA-like transposon in the Anthocyanidin synthase 1 (Ans-1) gene is responsible for apricot fruit colour in the raspberry (Rubus idaeus) cultivar ‘Varnes’

Daniel James Sargent, Matteo Buti, Stefan Martens, Claudio Pugliesi, Kjersti Aaby, Dag Røen, Chandra Bhan Yadav, Felicidad Fernández Fernández, Muath Alsheikh, Jahn Davik, R. Jordan Price

published 03 Feb 2025

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Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca

Andrea Mira-Jover, Eva Graciá, Andrés Giménez, Uwe Fritz, Roberto Carlos Rodríguez-Caro, Yann Bourgeois

published 09 Aug 2024

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Comparative genomics of Tn6411 transposons carrying the bla_IMP-1 gene in Pseudomonas aeruginosa

Lin Zheng, Zixian Wang, Jingyi Guo, Jiayao Guan, Gejin Lu, Jie Jing, Shiwen Sun, Yang Sun, Xue Ji, Bowen Jiang, Yongjie Wang, Chuanfang Zhao, Lingwei Zhu, Xuejun Guo

published 09 Jul 2024

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Robust circuitry-based scores of structural importance of human brain areas

Dániel Hegedűs, Vince Grolmusz

published 17 Jan 2024

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Decoding the genetic structure of conjugative plasmids in international clones of Klebsiella pneumoniae: A deep dive into bla_KPC, bla_NDM, bla_OXA-48, and bla_GES genes

Shadi Aghamohammad, Mahshid Khazani Asforooshani, Yeganeh Malek Mohammadi, Mohammad Sholeh, Farzad Badmasti

published 16 Nov 2023

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Importance of mobile genetic elements for dissemination of antimicrobial resistance in metagenomic sewage samples across the world

Markus H. K. Johansson, Frank M. Aarestrup, Thomas N. Petersen

published 19 Oct 2023

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Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks

Simon Orozco-Arias, Luis Humberto Lopez-Murillo, Johan S. Piña, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Luis Castillo-Ossa, Gustavo Isaza, Romain Guyot

published 21 Sep 2023

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Structure characteristics of mutation sites in two waxy alleles from Yunnan waxy maize (Zea mays L. var. certaina Kulesh) landraces

Tingting Sun, Xiaoyang Wu

published 08 Sep 2023

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Transposable element insertions in 1000 Swedish individuals

Kristine Bilgrav Saether, Daniel Nilsson, Håkan Thonberg, Emma Tham, Adam Ameur, Jesper Eisfeldt, Anna Lindstrand

published 28 Jul 2023

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Pan-genome survey of the fish pathogen Yersinia ruckeri links accessory- and amplified genes to virulence

Andreas Riborg, Snorre Gulla, Eve Zeyl Fiskebeck, David Ryder, David W. Verner-Jeffreys, Duncan J. Colquhoun, Timothy J. Welch

published 11 May 2023

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