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Systems biology

Signalling Network Construction for Modelling Plant Defence Response

Dragana Miljkovic, Tjaša Stare, [ ... ], Kristina Gruden

From Knockouts to Networks: Establishing Direct Cause-Effect Relationships through Graph Analysis

Andrea Pinna, Nicola Soranzo, Alberto de la Fuente

Gene Regulatory Networks from Multifactorial Perturbations Using Graphical Lasso: Application to the DREAM4 Challenge

Patricia Menéndez, Yiannis A. I. Kourmpetis, Cajo J. F. ter Braak, Fred A. van Eeuwijk

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

Mika Gustafsson, Michael Hörnquist

Inferring Nonlinear Gene Regulatory Networks from Gene Expression Data Based on Distance Correlation

Xiaobo Guo, Ye Zhang, [ ... ], Xueqin Wang

Bimodal and Hysteretic Expression in Mammalian Cells from a Synthetic Gene Circuit

Tobias May, Lee Eccleston, [ ... ], Dagmar Wirth

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

Michael Römer, Johannes Eichner, [ ... ], Andreas Zell

On Finding and Using Identifiable Parameter Combinations in Nonlinear Dynamic Systems Biology Models and COMBOS: A Novel Web Implementation

Nicolette Meshkat, Christine Er-zhen Kuo, Joseph DiStefano III

Robustness Analysis and Behavior Discrimination in Enzymatic Reaction Networks

Alexandre Donzé, Eric Fanchon, [ ... ], Philippe Tracqui

Inferring Phenotypic Properties from Single-Cell Characteristics

Peng Qiu

Beyond Element-Wise Interactions: Identifying Complex Interactions in Biological Processes

Christophe Ladroue, Shuixia Guo, Keith Kendrick, Jianfeng Feng

Assessment of Network Inference Methods: How to Cope with an Underdetermined Problem

Caroline Siegenthaler, Rudiyanto Gunawan

The Protein Architecture of Human Secretory Vesicles Reveals Differential Regulation of Signaling Molecule Secretion by Protein Kinases

Steven J. Bark, Jill Wegrzyn, [ ... ], Vivian Hook

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