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Structural proteins

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

Dominik Gront, Daniel W. Kulp, Robert M. Vernon, Charlie E. M. Strauss, David Baker

published 24 Aug 2011

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Application of MLST and Pilus Gene Sequence Comparisons to Investigate the Population Structures of Actinomyces naeslundii and Actinomyces oris

Uta Henssge, Thuy Do, Steven C. Gilbert, Steven Cox, Douglas Clark, Claes Wickström, A. J. M. Ligtenberg, David R. Radford, David Beighton

published 30 Jun 2011

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The Significance of the ProtDeform Score for Structure Prediction and Alignment

Jairo Rocha, Ricardo Alberich

published 28 Jun 2011

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Predicting Protein Folds with Fold-Specific PSSM Libraries

Yoojin Hong, Sree Vamsee Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian van Rossum, Randen L. Patterson

published 16 Jun 2011

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Ex Vivo Treatment with a Novel Synthetic Aminoglycoside NB54 in Primary Fibroblasts from Rett Syndrome Patients Suppresses MECP2 Nonsense Mutations

Manuela Vecsler, Bruria Ben Zeev, Igor Nudelman, Yair Anikster, Amos J. Simon, Ninette Amariglio, Gideon Rechavi, Timor Baasov, Eva Gak

published 13 Jun 2011

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Structure Collisions between Interacting Proteins

Dorothea Emig, Oliver Sander, Gabriele Mayr, Mario Albrecht

published 02 Jun 2011

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Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors

Barak Raveh, Nir London, Lior Zimmerman, Ora Schueler-Furman

published 29 Apr 2011

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Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks

Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern

published 18 Mar 2011

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Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures

Vishal N. Koparde, J. Neel Scarsdale, Glen E. Kellogg

published 05 Jan 2011

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Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, Serkan Erdin, R. Matthew Ward, Shivas R. Amin, Olivier Lichtarge

published 13 Dec 2010

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Evolutionary Innovations and the Organization of Protein Functions in Genotype Space

Evandro Ferrada, Andreas Wagner

published 30 Nov 2010

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Identifying Human Kinase-Specific Protein Phosphorylation Sites by Integrating Heterogeneous Information from Various Sources

Tingting Li, Pufeng Du, Nanfang Xu

published 15 Nov 2010

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Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Thomas Hamelryck, Mikael Borg, Martin Paluszewski, Jonas Paulsen, Jes Frellsen, Christian Andreetta, Wouter Boomsma, Sandro Bottaro, Jesper Ferkinghoff-Borg

published 10 Nov 2010

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