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Structural proteins

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

Dominik Gront, Daniel W. Kulp, [ ... ], David Baker

Application of MLST and Pilus Gene Sequence Comparisons to Investigate the Population Structures of Actinomyces naeslundii and Actinomyces oris

Uta Henssge, Thuy Do, [ ... ], David Beighton

The Significance of the ProtDeform Score for Structure Prediction and Alignment

Jairo Rocha, Ricardo Alberich

Predicting Protein Folds with Fold-Specific PSSM Libraries

Yoojin Hong, Sree Vamsee Chintapalli, [ ... ], Randen L. Patterson

Ex Vivo Treatment with a Novel Synthetic Aminoglycoside NB54 in Primary Fibroblasts from Rett Syndrome Patients Suppresses MECP2 Nonsense Mutations

Manuela Vecsler, Bruria Ben Zeev, [ ... ], Eva Gak

Structure Collisions between Interacting Proteins

Dorothea Emig, Oliver Sander, Gabriele Mayr, Mario Albrecht

Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors

Barak Raveh, Nir London, Lior Zimmerman, Ora Schueler-Furman

Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks

Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern

Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures

Vishal N. Koparde, J. Neel Scarsdale, Glen E. Kellogg

Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, [ ... ], Olivier Lichtarge

Evolutionary Innovations and the Organization of Protein Functions in Genotype Space

Evandro Ferrada, Andreas Wagner

Identifying Human Kinase-Specific Protein Phosphorylation Sites by Integrating Heterogeneous Information from Various Sources

Tingting Li, Pufeng Du, Nanfang Xu

Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Thomas Hamelryck, Mikael Borg, [ ... ], Jesper Ferkinghoff-Borg

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