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Structural proteins

The effect of the genomic GC content bias of prokaryotic organisms on the secondary structures of their proteins

Diana Barceló-Antemate, Fernando Fontove-Herrera, Walter Santos, Enrique Merino

published 04 May 2023

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Using AlphaFold to predict the impact of single mutations on protein stability and function

Marina A. Pak, Karina A. Markhieva, Mariia S. Novikova, Dmitry S. Petrov, Ilya S. Vorobyev, Ekaterina S. Maksimova, Fyodor A. Kondrashov, Dmitry N. Ivankov

published 16 Mar 2023

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Identification of potential therapeutic intervening targets by in-silico analysis of nsSNPs in preterm birth-related genes

Muhammad Bilal Azmi, Waqasuddin Khan, M. Kamran Azim, Muhammad Imran Nisar, Fyezah Jehan

published 07 Mar 2023

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Ancestral origins are associated with SARS-CoV-2 susceptibility and protection in a Florida patient population

Yiran Shen, Bhuwan Khatri, Santosh Rananaware, Danmeng Li, David A. Ostrov, Piyush K. Jain, Christopher J. Lessard, Cuong Q. Nguyen

published 17 Jan 2023

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Retrospective in silico mutation profiling of SARS-CoV-2 structural proteins circulating in Uganda by July 2021: Towards refinement of COVID-19 disease vaccines, diagnostics, and therapeutics

Steven Odongo, Hedmon Okella, Christian Ndekezi, Moses Okee, Monica Namayanja, Brian Mujuni, Yann G. J. Sterckx, Dennison Kizito, Magdalena Radwanska, Stefan Magez, Kokas Ikwap, Frank Nobert Mwiine, Julius Julian Lutwama, Charles Ibingira

published 22 Dec 2022

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Machine learning models exploring characteristic single-nucleotide signatures in yellow fever virus

Álvaro Salgado, Raquel C. de Melo-Minardi, Marta Giovanetti, Adriano Veloso, Francielly Morais-Rodrigues, Talita Adelino, Ronaldo de Jesus, Stephane Tosta, Vasco Azevedo, José Lourenco, Luiz Carlos J. Alcantara

published 12 Dec 2022

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Corneal epithelium in keratoconus underexpresses active NRF2 and a subset of oxidative stress-related genes

Tatiana Lupasco, Zhiguo He, Myriam Cassagne, Tomy Sagnial, Lise Brion, Pierre Fournié, Philippe Gain, Gilles Thuret, Michèle Allouche, François Malecaze, Michel Simon, Stéphane D. Galiacy

published 14 Oct 2022

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New insights into disordered proteins and regions according to the FOD-M model

Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny

published 10 Oct 2022

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A Putative long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2

Okiemute Beatrice Omoru, Filipe Pereira, Sarath Chandra Janga, Amirhossein Manzourolajdad

published 01 Sep 2022

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Statistical potentials from the Gaussian scaling behaviour of chain fragments buried within protein globules

Stefano Zamuner, Flavio Seno, Antonio Trovato

published 27 Jan 2022

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Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

published 21 Jan 2022

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Interaction between β-lactoglobulin and EGCG under high-pressure by molecular dynamics simulation

Yechuan Huang, Xicai Zhang, Huayi Suo

published 21 Dec 2021

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The first report of porcine parvovirus 7 (PPV7) in Colombia demonstrates the presence of variants associated with modifications at the level of the VP2-capsid protein

Diana S. Vargas-Bermudez, Santiago Rendon-Marin, Julian Ruiz-Saenz, Dario Mogollón, Jairo Jaime

published 16 Dec 2021

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