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Split-decomposition method

Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae

Annamária Tóth, Anton Hausknecht, [ ... ], László G. Nagy

Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets

Weizhong Li, John C. Wooley, Adam Godzik

Whole Genome Complete Resequencing of Bacillus subtilis Natto by Combining Long Reads with High-Quality Short Reads

Mayumi Kamada, Sumitaka Hase, [ ... ], Yasubumi Sakakibara

Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison

Dorota Latek, Pawel Pasznik, Teresa Carlomagno, Slawomir Filipek

Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster

Muying Ying, Xiaotian Huang, [ ... ], Kemin Jie

Study on Phylogenetic Relationships, Variability, and Correlated Mutations in M2 Proteins of Influenza Virus A

Ly Le, Jacek Leluk

Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests

Chioko Nagao, Nozomi Nagano, Kenji Mizuguchi

Using RosettaLigand for Small Molecule Docking into Comparative Models

Kristian W. Kaufmann, Jens Meiler

Alignment-Free Design of Highly Discriminatory Diagnostic Primer Sets for Escherichia coli O104:H4 Outbreak Strains

Leighton Pritchard, Nicola J. Holden, [ ... ], Ian K. Toth

Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns

Assaf Malik, Abraham Korol, [ ... ], Mark Band

Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment Errors

Russell J. Dickson, Gregory B. Gloor

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