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Split-decomposition method

Highly Sensitive Detection of Individual HEAT and ARM Repeats with HHpred and COACH

Fred Kippert, Dietlind L. Gerloff

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

Kris A. Christensen, Jong S. Leong, [ ... ], Robert H. Devlin

Evolution of Pentameric Ligand-Gated Ion Channels: Pro-Loop Receptors

Mariama Jaiteh, Antoine Taly, Jérôme Hénin

Identification and Characterization of NF-Y Transcription Factor Families in the Monocot Model Plant Brachypodium distachyon

Shuanghe Cao, Roderick W. Kumimoto, [ ... ], Ben F. Holt III

Mutationmapper: A Tool to Aid the Mapping of Protein Mutation Data

Shabana Vohra, Philip C. Biggin

Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

Evaluation of Alignment Algorithms for Discovery and Identification of Pathogens Using RNA-Seq

Ivan Borozan, Stuart N. Watt, Vincent Ferretti

Classification of the Adenylation and Acyl-Transferase Activity of NRPS and PKS Systems Using Ensembles of Substrate Specific Hidden Markov Models

Barzan I. Khayatt, Lex Overmars, Roland J. Siezen, Christof Francke

Genomic Signal Processing Methods for Computation of Alignment-Free Distances from DNA Sequences

Ernesto Borrayo, E. Gerardo Mendizabal-Ruiz, [ ... ], J. Alejandro Morales

Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, [ ... ], Tesfaye Wubet

The Dawn of Open Access to Phylogenetic Data

Andrew F. Magee, Michael R. May, Brian R. Moore

Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations

Etienne Lord, Mickael Leclercq, [ ... ], Vladimir Makarenkov

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