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Split-decomposition method

Conservation, Variability and the Modeling of Active Protein Kinases

James D. R. Knight, Bin Qian, David Baker, Rashmi Kothary

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, [ ... ], Daniel R. Kuritzkes

Prediction of Cyclin-Dependent Kinase Phosphorylation Substrates

Emmanuel J. Chang, Rashida Begum, Brian T. Chait, Terry Gaasterland

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

The Potential of Automatic Word Comparison for Historical Linguistics

Johann-Mattis List, Simon J. Greenhill, Russell D. Gray

Evolutionary Descent of Prion Genes from the ZIP Family of Metal Ion Transporters

Gerold Schmitt-Ulms, Sepehr Ehsani, [ ... ], Holger Wille

Mining RNA–Seq Data for Infections and Contaminations

Thomas Bonfert, Gergely Csaba, Ralf Zimmer, Caroline C. Friedel

Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

Carlo Baldassi, Marco Zamparo, [ ... ], Andrea Pagnani

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, [ ... ], Abdu F. Azad

On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

PHYRN: A Robust Method for Phylogenetic Analysis of Highly Divergent Sequences

Gaurav Bhardwaj, Kyung Dae Ko, [ ... ], Damian B. van Rossum

Large-Scale Sequence Analysis of Hemagglutinin of Influenza A Virus Identifies Conserved Regions Suitable for Targeting an Anti-Viral Response

Leepakshi Sahini, Anna Tempczyk-Russell, Ritu Agarwal

HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Michelle T. Dimon, Katherine Sorber, Joseph L. DeRisi

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