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Split-decomposition method

The Opportunistic Pathogen Propionibacterium acnes: Insights into Typing, Human Disease, Clonal Diversification and CAMP Factor Evolution

Andrew McDowell, István Nagy, [ ... ], Sheila Patrick

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, [ ... ], Daniel R. Kuritzkes

Prediction of Cyclin-Dependent Kinase Phosphorylation Substrates

Emmanuel J. Chang, Rashida Begum, Brian T. Chait, Terry Gaasterland

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

Evolutionary Descent of Prion Genes from the ZIP Family of Metal Ion Transporters

Gerold Schmitt-Ulms, Sepehr Ehsani, [ ... ], Holger Wille

The Potential of Automatic Word Comparison for Historical Linguistics

Johann-Mattis List, Simon J. Greenhill, Russell D. Gray

Mining RNA–Seq Data for Infections and Contaminations

Thomas Bonfert, Gergely Csaba, Ralf Zimmer, Caroline C. Friedel

Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

Carlo Baldassi, Marco Zamparo, [ ... ], Andrea Pagnani

On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, [ ... ], Abdu F. Azad

PHYRN: A Robust Method for Phylogenetic Analysis of Highly Divergent Sequences

Gaurav Bhardwaj, Kyung Dae Ko, [ ... ], Damian B. van Rossum

HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Michelle T. Dimon, Katherine Sorber, Joseph L. DeRisi

Large-Scale Sequence Analysis of Hemagglutinin of Influenza A Virus Identifies Conserved Regions Suitable for Targeting an Anti-Viral Response

Leepakshi Sahini, Anna Tempczyk-Russell, Ritu Agarwal

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