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Split-decomposition method

HPC: Hierarchical phylogeny construction

Anindya Das, Xiaoqiu Huang

The difficulty of aligning intrinsically disordered protein sequences as assessed by conservation and phylogeny

Andrew C. Riley, Daniel A. Ashlock, Steffen P. Graether

CHAPAO: Likelihood and hierarchical reference-based representation of biomolecular sequences and applications to compressing multiple sequence alignments

Md Ashiqur Rahman, Abdullah Aman Tutul, Sifat Muhammad Abdullah, Md. Shamsuzzoha Bayzid

Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

Ali Bigdeli, Mostafa Ghaderi-Zefrehei, [ ... ], S. Shahriar Arab

Resolving Acuticulata (Metridioidea: Enthemonae: Actiniaria), a clade containing many invasive species of sea anemones

Isabel A. M. Pen, Charlotte Benedict, [ ... ], Marymegan Daly

Ancient multiplicity in cyclic nucleotide-gated (CNG) cation channel repertoire was reduced in the ancestor of Olfactores before re-expansion by whole genome duplications in vertebrates

David Lagman, Helen J. Haines, Xesús M. Abalo, Dan Larhammar

Mutational networks of escape from transmitted HIV-1 infection

Elma H. Akand, Stephen J. Maher, John M. Murray

Genomic analysis of SARS-CoV-2 variants of concern circulating in Hawai’i to facilitate public-health policies

David P. Maison, Sean B. Cleveland, Vivek R. Nerurkar

Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

SAKE: Strobemer-assisted k-mer extraction

Miika Leinonen, Leena Salmela

Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent

Alisa Prusokiene, Neil Boonham, Adrian Fox, Thomas P. Howard

WDR75: An essential protein for ribosome assembly undergoing purifying selection

Lauren Lee, Justen B. Whittall

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