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Split-decomposition method

Structural and Functional Roles of Coevolved Sites in Proteins

Saikat Chakrabarti, Anna R. Panchenko

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

Correlating Molecular Phylogeny with Venom Apparatus Occurrence in Panamic Auger Snails (Terebridae)

Mandë Holford, Nicolas Puillandre, [ ... ], Baldomero M. Olivera

Evolutionary Descent of Prion Genes from the ZIP Family of Metal Ion Transporters

Gerold Schmitt-Ulms, Sepehr Ehsani, [ ... ], Holger Wille

Highly Sensitive Detection of Individual HEAT and ARM Repeats with HHpred and COACH

Fred Kippert, Dietlind L. Gerloff

Prediction and Experimental Validation of Novel STAT3 Target Genes in Human Cancer Cells

Young Min Oh, Jong Kyoung Kim, [ ... ], Joo-Yeon Yoo

Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

Robert K. Bradley, Andrew V. Uzilov, [ ... ], Ian Holmes

Correlated Mutation Analysis on the Catalytic Domains of Serine/Threonine Protein Kinases

Feng Xu, Pan Du, [ ... ], Long Yu

Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, [ ... ], Daniel R. Kuritzkes

smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, [ ... ], S. Cenk Sahinalp

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