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Split-decomposition method

Most yeast SH3 domains bind peptide targets with high intrinsic specificity

Tom Brown, Nick Brown, Elliott J. Stollar

Systematic analysis of non-structural protein features for the prediction of PTM function potential by artificial neural networks

Henry M. Dewhurst, Matthew P. Torres

Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle

Dirk Dolle, Juan L. Mateo, [ ... ], Joachim Wittbrodt

Curated multiple sequence alignment for the Adenomatous Polyposis Coli (APC) gene and accuracy of in silico pathogenicity predictions

Alexander D. Karabachev, Dylan J. Martini, [ ... ], Marc S. Greenblatt

Contact prediction is hardest for the most informative contacts, but improves with the incorporation of contact potentials

Jack Holland, Qinxin Pan, Gevorg Grigoryan

SeqFeatR for the Discovery of Feature-Sequence Associations

Bettina Budeus, Jörg Timm, Daniel Hoffmann

Sequence and structure comparison of ATP synthase F₀ subunits 6 and 8 in notothenioid fish

Gunjan Katyal, Brad Ebanks, [ ... ], Lisa Chakrabarti

High-Resolution Identification of Specificity Determining Positions in the LacI Protein Family Using Ensembles of Sub-Sampled Alignments

Roman Sloutsky, Kristen M. Naegle

Exploring the potential of a structural alphabet-based tool for mining multiple target conformations and target flexibility insight

Leslie Regad, Jean-Baptiste Chéron, [ ... ], Anne-Claude Camproux

A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, [ ... ], Gail L. Rosen

MLgsc: A Maximum-Likelihood General Sequence Classifier

Thomas Junier, Vincent Hervé, Tina Wunderlin, Pilar Junier

Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams

Shigeru Shimamura, Takashi Kaneko, [ ... ], Tadashi Maruyama

Alignment-free method for functional annotation of amino acid substitutions: Application on epigenetic factors involved in hematologic malignancies

Branislava Gemović, Vladimir Perović, [ ... ], Nevena Veljkovic

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