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Split-decomposition method

Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle

Dirk Dolle, Juan L. Mateo, [ ... ], Joachim Wittbrodt

SeqFeatR for the Discovery of Feature-Sequence Associations

Bettina Budeus, Jörg Timm, Daniel Hoffmann

The role of internal transcribed spacer 2 secondary structures in classifying mycoparasitic Ampelomyces

Rosa E. Prahl, Shahjahan Khan, Ravinesh C. Deo

Most yeast SH3 domains bind peptide targets with high intrinsic specificity

Tom Brown, Nick Brown, Elliott J. Stollar

Contact prediction is hardest for the most informative contacts, but improves with the incorporation of contact potentials

Jack Holland, Qinxin Pan, Gevorg Grigoryan

A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, [ ... ], Gail L. Rosen

High-Resolution Identification of Specificity Determining Positions in the LacI Protein Family Using Ensembles of Sub-Sampled Alignments

Roman Sloutsky, Kristen M. Naegle

Adjacent Nucleotide Dependence in ncRNA and Order-1 SCFG for ncRNA Identification

Thomas K. F. Wong, Tak-Wah Lam, Wing-Kin Sung, Siu-Ming Yiu

Heterogeneity among Homologs of Cutinase-Like Protein Cut5 in Mycobacteria

Deepshikha Verma, Lahari Das, [ ... ], Grish C. Varshney

MLgsc: A Maximum-Likelihood General Sequence Classifier

Thomas Junier, Vincent Hervé, Tina Wunderlin, Pilar Junier

Alignment-free method for functional annotation of amino acid substitutions: Application on epigenetic factors involved in hematologic malignancies

Branislava Gemović, Vladimir Perović, [ ... ], Nevena Veljkovic

AglQ Is a Novel Component of the Haloferax volcanii N-Glycosylation Pathway

Adi Arbiv, Sophie Yurist-Doutsch, Ziqiang Guan, Jerry Eichler

SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

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