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Split-decomposition method

Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, Christiane Fischer, Rolf Daniel, Tesfaye Wubet

published 21 Feb 2012

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Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

Stefanie Hartmann, Conrad Helm, Birgit Nickel, Matthias Meyer, Torsten H. Struck, Ralph Tiedemann, Joachim Selbig, Christoph Bleidorn

published 20 Jan 2012

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Accounting For Alignment Uncertainty in Phylogenomics

Martin Wu, Sourav Chatterji, Jonathan A. Eisen

published 17 Jan 2012

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Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, Hua-Fang Sheng, Yu Wang, Yan He, Fei Zou, Hong-Wei Zhou

published 11 Jan 2012

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Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations

Etienne Lord, Mickael Leclercq, Alix Boc, Abdoulaye Baniré Diallo, Vladimir Makarenkov

published 11 Jan 2012

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Identification of Domains and Amino Acids Essential to the Collagen Galactosyltransferase Activity of GLT25D1

Claire Perrin-Tricaud, Christoph Rutschmann, Thierry Hennet

published 21 Dec 2011

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Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families

Lucas Bleicher, Ney Lemke, Richard Charles Garratt

published 20 Dec 2011

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GlyGly-CTERM and Rhombosortase: A C-Terminal Protein Processing Signal in a Many-to-One Pairing with a Rhomboid Family Intramembrane Serine Protease

Daniel H. Haft, Neha Varghese

published 14 Dec 2011

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Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

published 12 Dec 2011

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Identifying Hosts of Families of Viruses: A Machine Learning Approach

Anil Raj, Michael Dewar, Gustavo Palacios, Raul Rabadan, Christopher H. Wiggins

published 09 Dec 2011

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Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, Cheng-Hua Wang, Si-Yu Long, Ri-Bo Huang

published 05 Dec 2011

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Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

published 02 Dec 2011

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On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

published 30 Nov 2011

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