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Split-decomposition method

Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, [ ... ], Tesfaye Wubet

Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

Stefanie Hartmann, Conrad Helm, [ ... ], Christoph Bleidorn

Accounting For Alignment Uncertainty in Phylogenomics

Martin Wu, Sourav Chatterji, Jonathan A. Eisen

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, [ ... ], Hong-Wei Zhou

Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations

Etienne Lord, Mickael Leclercq, [ ... ], Vladimir Makarenkov

Identification of Domains and Amino Acids Essential to the Collagen Galactosyltransferase Activity of GLT25D1

Claire Perrin-Tricaud, Christoph Rutschmann, Thierry Hennet

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families

Lucas Bleicher, Ney Lemke, Richard Charles Garratt

GlyGly-CTERM and Rhombosortase: A C-Terminal Protein Processing Signal in a Many-to-One Pairing with a Rhomboid Family Intramembrane Serine Protease

Daniel H. Haft, Neha Varghese

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

Identifying Hosts of Families of Viruses: A Machine Learning Approach

Anil Raj, Michael Dewar, [ ... ], Christopher H. Wiggins

Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, [ ... ], Ri-Bo Huang

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, [ ... ], Wen-Lian Hsu

On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

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