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Split-decomposition method

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, [ ... ], Jan Gorodkin

Quality Score Based Identification and Correction of Pyrosequencing Errors

Shyamala Iyer, Heather Bouzek, [ ... ], James I. Mullins

Functional Divergence and Convergent Evolution in the Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenases of Diverse Eukaryotic Algae

Daniel Gaston, Andrew J. Roger

Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

Vincent Ranwez

Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, [ ... ], Ri-Bo Huang

Functional Integration of the Conserved Domains of Shoc2 Scaffold

Myoungkun Jeoung, Lina Abdelmoti, [ ... ], Emilia Galperin

Multiple Co-Evolutionary Networks Are Supported by the Common Tertiary Scaffold of the LacI/GalR Proteins

Daniel J. Parente, Liskin Swint-Kruse

A Coevolutionary Residue Network at the Site of a Functionally Important Conformational Change in a Phosphohexomutase Enzyme Family

Yingying Lee, Jacob Mick, Cristina Furdui, Lesa J. Beamer

Revisiting the Phylogeny of the Animal Formins: Two New Subtypes, Relationships with Multiple Wing Hairs Proteins, and a Lost Human Formin

David Pruyne

Quantifying the Displacement of Mismatches in Multiple Sequence Alignment Benchmarks

Punto Bawono, Arjan van der Velde, Sanne Abeln, Jaap Heringa

TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional information

Munira Alballa, Faizah Aplop, Gregory Butler

Sequence-structure relationships, expression profiles, and disease-associated mutations in the paralogs of phosphoglucomutase 1

Andrew G. Muenks, Kyle M. Stiers, Lesa J. Beamer

Generalized Baum-Welch Algorithm Based on the Similarity between Sequences

Vahid Rezaei, Hamid Pezeshk, Horacio Pérez-Sa'nchez

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