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Split-decomposition method

The YARHG Domain: An Extracellular Domain in Search of a Function

Penny Coggill, Alex Bateman

published 17 May 2012

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Integrated Analysis of Residue Coevolution and Protein Structure in ABC Transporters

Attila Gulyás-Kovács

published 08 May 2012

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Accurate Reconstruction of Insertion-Deletion Histories by Statistical Phylogenetics

Oscar Westesson, Gerton Lunter, Benedict Paten, Ian Holmes

published 20 Apr 2012

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PHYRN: A Robust Method for Phylogenetic Analysis of Highly Divergent Sequences

Gaurav Bhardwaj, Kyung Dae Ko, Yoojin Hong, Zhenhai Zhang, Ngai Lam Ho, Sree V. Chintapalli, Lindsay A. Kline, Matthew Gotlin, David Nicholas Hartranft, Morgen E. Patterson, Foram Dave, Evan J. Smith, Edward C. Holmes, Randen L. Patterson, Damian B. van Rossum

published 13 Apr 2012

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Expression of NADPH Oxidase (NOX) 5 in Rabbit Corneal Stromal Cells

Farhan Rizvi, Tom Heimann, William J. O'Brien

published 12 Apr 2012

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Alignment-Free Design of Highly Discriminatory Diagnostic Primer Sets for Escherichia coli O104:H4 Outbreak Strains

Leighton Pritchard, Nicola J. Holden, Martina Bielaszewska, Helge Karch, Ian K. Toth

published 05 Apr 2012

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Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

David A. Hysom, Pejman Naraghi-Arani, Maher Elsheikh, A. Celena Carrillo, Peter L. Williams, Shea N. Gardner

published 02 Apr 2012

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Treelength Optimization for Phylogeny Estimation

Kevin Liu, Tandy Warnow

published 19 Mar 2012

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Phylo: A Citizen Science Approach for Improving Multiple Sequence Alignment

Alexander Kawrykow, Gary Roumanis, Alfred Kam, Daniel Kwak, Clarence Leung, Chu Wu, Eleyine Zarour, Phylo players , Luis Sarmenta, Mathieu Blanchette, Jérôme Waldispühl

published 07 Mar 2012

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Detecting Remote Sequence Homology in Disordered Proteins: Discovery of Conserved Motifs in the N-Termini of Mononegavirales phosphoproteins

David Karlin, Robert Belshaw

published 05 Mar 2012

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Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, Christiane Fischer, Rolf Daniel, Tesfaye Wubet

published 21 Feb 2012

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Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

Stefanie Hartmann, Conrad Helm, Birgit Nickel, Matthias Meyer, Torsten H. Struck, Ralph Tiedemann, Joachim Selbig, Christoph Bleidorn

published 20 Jan 2012

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Accounting For Alignment Uncertainty in Phylogenomics

Martin Wu, Sourav Chatterji, Jonathan A. Eisen

published 17 Jan 2012

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