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Split-decomposition method

The difficulty of aligning intrinsically disordered protein sequences as assessed by conservation and phylogeny

Andrew C. Riley, Daniel A. Ashlock, Steffen P. Graether

published 13 Jul 2023

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On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

published 13 Jul 2023

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Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

published 08 May 2023

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Telomerase RNA plays a major role in the completion of the life cycle in Ustilago maydis and shares conserved domains with other Ustilaginales

Juan Antonio Sanpedro-Luna, José Juan Jacinto-Vázquez, Estela Anastacio-Marcelino, Carmen María Posadas-Gutiérrez, Iván Olmos-Pineda, Jesús Antonio González-Bernal, Moisés Carcaño-Montiel, Leticia Vega-Alvarado, Candelario Vázquez-Cruz, Patricia Sánchez-Alonso

published 23 Mar 2023

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Ancient multiplicity in cyclic nucleotide-gated (CNG) cation channel repertoire was reduced in the ancestor of Olfactores before re-expansion by whole genome duplications in vertebrates

David Lagman, Helen J. Haines, Xesús M. Abalo, Dan Larhammar

published 30 Dec 2022

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Genomic analysis of SARS-CoV-2 variants of concern circulating in Hawai’i to facilitate public-health policies

David P. Maison, Sean B. Cleveland, Vivek R. Nerurkar

published 01 Dec 2022

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Chimeric DNA byproducts in strand displacement amplification using the T7 replisome

Dillon B. Nye, Nathan A. Tanner

published 19 Sep 2022

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Computational analysis on two putative mitochondrial protein-coding genes from the Emydura subglobosa genome: A functional annotation approach

Megan Yu

published 18 Aug 2022

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CView: A network based tool for enhanced alignment visualization

Raquel Linheiro, Stephen Sabatino, Diana Lobo, John Archer

published 13 Jun 2022

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CHAPAO: Likelihood and hierarchical reference-based representation of biomolecular sequences and applications to compressing multiple sequence alignments

Md Ashiqur Rahman, Abdullah Aman Tutul, Sifat Muhammad Abdullah, Md. Shamsuzzoha Bayzid

published 18 Apr 2022

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Neural crest cell genes and the domestication syndrome: A comparative analysis of selection

Andrew O. Rubio, Kyle Summers

published 11 Feb 2022

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The GH19 Engineering Database: Sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19

Marco Orlando, Patrick C. F. Buchholz, Marina Lotti, Jürgen Pleiss

published 26 Oct 2021

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Sequence and structure comparison of ATP synthase F₀ subunits 6 and 8 in notothenioid fish

Gunjan Katyal, Brad Ebanks, Magnus Lucassen, Chiara Papetti, Lisa Chakrabarti

published 06 Oct 2021

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