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Split-decomposition method

Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences

Jill L. Wegrzyn, Brian Y. Lin, [ ... ], Kristian A. Stevens

Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data

Zheng Wang, R. Henrik Nilsson, [ ... ], Jeffrey P. Townsend

Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

Stefanie Hartmann, Conrad Helm, [ ... ], Christoph Bleidorn

Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

Robert K. Bradley, Andrew V. Uzilov, [ ... ], Ian Holmes

Base-Calling Algorithm with Vocabulary (BCV) Method for Analyzing Population Sequencing Chromatograms

Yuri S. Fantin, Alexey D. Neverov, [ ... ], Vladimir P. Chulanov

Relating the Disease Mutation Spectrum to the Evolution of the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)

Lavanya Rishishwar, Neha Varghese, [ ... ], Nael A. McCarty

Identifying and Seeing beyond Multiple Sequence Alignment Errors Using Intra-Molecular Protein Covariation

Russell J. Dickson, Lindi M. Wahl, Andrew D. Fernandes, Gregory B. Gloor

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, [ ... ], Wen-Lian Hsu

Odorant Binding Proteins of the Red Imported Fire Ant, Solenopsis invicta: An Example of the Problems Facing the Analysis of Widely Divergent Proteins

Dietrich Gotzek, Hugh M. Robertson, Yannick Wurm, DeWayne Shoemaker

Detecting Remote Sequence Homology in Disordered Proteins: Discovery of Conserved Motifs in the N-Termini of Mononegavirales phosphoproteins

David Karlin, Robert Belshaw

Evolution of the Plasma and Tissue Kallikreins, and Their Alternative Splicing Isoforms

Vassiliki Lila Koumandou, Andreas Scorilas

Comparative Genomics of CytR, an Unusual Member of the LacI Family of Transcription Factors

Natalia V. Sernova, Mikhail S. Gelfand

The Mitochondrial Genomes of a Myxozoan Genus Kudoa Are Extremely Divergent in Metazoa

Fumihiko Takeuchi, Tsuyoshi Sekizuka, [ ... ], Makoto Kuroda

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