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Split-decomposition method

Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences

Jill L. Wegrzyn, Brian Y. Lin, [ ... ], Kristian A. Stevens

Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

Robert K. Bradley, Andrew V. Uzilov, [ ... ], Ian Holmes

Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

Stefanie Hartmann, Conrad Helm, [ ... ], Christoph Bleidorn

Base-Calling Algorithm with Vocabulary (BCV) Method for Analyzing Population Sequencing Chromatograms

Yuri S. Fantin, Alexey D. Neverov, [ ... ], Vladimir P. Chulanov

Identifying and Seeing beyond Multiple Sequence Alignment Errors Using Intra-Molecular Protein Covariation

Russell J. Dickson, Lindi M. Wahl, Andrew D. Fernandes, Gregory B. Gloor

Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data

Zheng Wang, R. Henrik Nilsson, [ ... ], Jeffrey P. Townsend

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, [ ... ], Wen-Lian Hsu

Odorant Binding Proteins of the Red Imported Fire Ant, Solenopsis invicta: An Example of the Problems Facing the Analysis of Widely Divergent Proteins

Dietrich Gotzek, Hugh M. Robertson, Yannick Wurm, DeWayne Shoemaker

Improved Phylogenetic Analyses Corroborate a Plausible Position of Martialis heureka in the Ant Tree of Life

Patrick Kück, Francisco Hita Garcia, Bernhard Misof, Karen Meusemann

Comparative Genomics of CytR, an Unusual Member of the LacI Family of Transcription Factors

Natalia V. Sernova, Mikhail S. Gelfand

Identifying Hosts of Families of Viruses: A Machine Learning Approach

Anil Raj, Michael Dewar, [ ... ], Christopher H. Wiggins

Structural and Functional Roles of Coevolved Sites in Proteins

Saikat Chakrabarti, Anna R. Panchenko

Ultraconserved Elements in the Olig2 Promoter

Christina T. L. Chen, David I. Gottlieb, Barak A. Cohen

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