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Software tools

A TMA De-Arraying Method for High Throughput Biomarker Discovery in Tissue Research

Yinhai Wang, Kienan Savage, Claire Grills, Andrena McCavigan, Jacqueline A. James, Dean A. Fennell, Peter W. Hamilton

published 07 Oct 2011

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AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

Jiantao Shi, Wentao Yang, Mingjie Chen, Yanzhi Du, Ji Zhang, Kankan Wang

published 12 Sep 2011

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Minor Physical Anomalies in Patients with Schizophrenia, Unaffected First-Degree Relatives, and Healthy Controls: A Meta-Analysis

Ting Xu, Raymond C. K. Chan, Michael T. Compton

published 08 Sep 2011

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Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

Sidhartha Chaudhury, Monica Berrondo, Brian D. Weitzner, Pravin Muthu, Hannah Bergman, Jeffrey J. Gray

published 02 Aug 2011

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REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek, Matko Bošnjak, Nives Škunca, Tomislav Šmuc

published 18 Jul 2011

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Computational Analysis of the Spatiotemporal Coordination of Polarized PI3K and Rac1 Activities in Micro-Patterned Live Cells

Shaoying Lu, Tae-jin Kim, Chih-En Chen, Mingxing Ouyang, Jihye Seong, Xiaoling Liao, Yingxiao Wang

published 27 Jun 2011

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SAGES: A Suite of Freely-Available Software Tools for Electronic Disease Surveillance in Resource-Limited Settings

Sheri L. Lewis, Brian H. Feighner, Wayne A. Loschen, Richard A. Wojcik, Joseph F. Skora, Jacqueline S. Coberly, David L. Blazes

published 10 May 2011

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GPS-CCD: A Novel Computational Program for the Prediction of Calpain Cleavage Sites

Zexian Liu, Jun Cao, Xinjiao Gao, Qian Ma, Jian Ren, Yu Xue

published 20 Apr 2011

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A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, Yang Yang, Yifei Tang, Jing Shang, Bairong Shen

published 14 Mar 2011

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An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, Leping Li, Gordon Robertson, Xuekui Zhang, Raphael Gottardo

published 16 Feb 2011

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Estimating the Power of Indirect Comparisons: A Simulation Study

Edward J. Mills, Isabella Ghement, Christopher O'Regan, Kristian Thorlund

published 21 Jan 2011

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Accuracy of CNV Detection from GWAS Data

Dandan Zhang, Yudong Qian, Nirmala Akula, Ney Alliey-Rodriguez, Jinsong Tang, The Bipolar Genome Study , Elliot S. Gershon, Chunyu Liu

published 13 Jan 2011

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JULIDE: A Software Tool for 3D Reconstruction and Statistical Analysis of Autoradiographic Mouse Brain Sections

Delphine Ribes, Julia Parafita, Rémi Charrier, Fulvio Magara, Pierre J. Magistretti, Jean-Philippe Thiran

published 23 Nov 2010

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