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Software tools

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, Yang Yang, Yifei Tang, Jing Shang, Bairong Shen

published 14 Mar 2011

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An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, Leping Li, Gordon Robertson, Xuekui Zhang, Raphael Gottardo

published 16 Feb 2011

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Estimating the Power of Indirect Comparisons: A Simulation Study

Edward J. Mills, Isabella Ghement, Christopher O'Regan, Kristian Thorlund

published 21 Jan 2011

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Accuracy of CNV Detection from GWAS Data

Dandan Zhang, Yudong Qian, Nirmala Akula, Ney Alliey-Rodriguez, Jinsong Tang, The Bipolar Genome Study , Elliot S. Gershon, Chunyu Liu

published 13 Jan 2011

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JULIDE: A Software Tool for 3D Reconstruction and Statistical Analysis of Autoradiographic Mouse Brain Sections

Delphine Ribes, Julia Parafita, Rémi Charrier, Fulvio Magara, Pierre J. Magistretti, Jean-Philippe Thiran

published 23 Nov 2010

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Emotion Modulation of Visual Attention: Categorical and Temporal Characteristics

Bethany G. Ciesielski, Thomas Armstrong, David H. Zald, Bunmi O. Olatunji

published 05 Nov 2010

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jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web

Samuel A. Smits, Cleber C. Ouverney

published 18 Aug 2010

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Interplay between Affect and Arousal in Recognition Memory

Ciara M. Greene, Pooja Bahri, David Soto

published 23 Jul 2010

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Estimating and Modelling Bias of the Hierarchical Partitioning Public-Domain Software: Implications in Environmental Management and Conservation

Pedro P. Olea, Patricia Mateo-Tomás, Ángel de Frutos

published 21 Jul 2010

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Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

Elizabeth G. Wilbanks, Marc T. Facciotti

published 08 Jul 2010

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A Software Tool to Model Genetic Regulatory Networks. Applications to the Modeling of Threshold Phenomena and of Spatial Patterning in Drosophila

Rui Dilão, Daniele Muraro

published 27 May 2010

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TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, Jo L. Chung, Steven Head, Alessandro Sette, Bjoern Peters

published 01 Apr 2010

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TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web

Ralph Pethica, Gary Barker, Tim Kovacs, Julian Gough

published 28 Jan 2010

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