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Software tools

A TMA De-Arraying Method for High Throughput Biomarker Discovery in Tissue Research

Yinhai Wang, Kienan Savage, [ ... ], Peter W. Hamilton

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

Jiantao Shi, Wentao Yang, [ ... ], Kankan Wang

Minor Physical Anomalies in Patients with Schizophrenia, Unaffected First-Degree Relatives, and Healthy Controls: A Meta-Analysis

Ting Xu, Raymond C. K. Chan, Michael T. Compton

Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

Sidhartha Chaudhury, Monica Berrondo, [ ... ], Jeffrey J. Gray

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek, Matko Bošnjak, Nives Škunca, Tomislav Šmuc

Computational Analysis of the Spatiotemporal Coordination of Polarized PI3K and Rac1 Activities in Micro-Patterned Live Cells

Shaoying Lu, Tae-jin Kim, [ ... ], Yingxiao Wang

SAGES: A Suite of Freely-Available Software Tools for Electronic Disease Surveillance in Resource-Limited Settings

Sheri L. Lewis, Brian H. Feighner, [ ... ], David L. Blazes

GPS-CCD: A Novel Computational Program for the Prediction of Calpain Cleavage Sites

Zexian Liu, Jun Cao, [ ... ], Yu Xue

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, [ ... ], Bairong Shen

An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, [ ... ], Raphael Gottardo

Estimating the Power of Indirect Comparisons: A Simulation Study

Edward J. Mills, Isabella Ghement, Christopher O'Regan, Kristian Thorlund

Accuracy of CNV Detection from GWAS Data

Dandan Zhang, Yudong Qian, [ ... ], Chunyu Liu

JULIDE: A Software Tool for 3D Reconstruction and Statistical Analysis of Autoradiographic Mouse Brain Sections

Delphine Ribes, Julia Parafita, [ ... ], Jean-Philippe Thiran

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