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Software tools

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, [ ... ], Bairong Shen

An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, [ ... ], Raphael Gottardo

Estimating the Power of Indirect Comparisons: A Simulation Study

Edward J. Mills, Isabella Ghement, Christopher O'Regan, Kristian Thorlund

Accuracy of CNV Detection from GWAS Data

Dandan Zhang, Yudong Qian, [ ... ], Chunyu Liu

JULIDE: A Software Tool for 3D Reconstruction and Statistical Analysis of Autoradiographic Mouse Brain Sections

Delphine Ribes, Julia Parafita, [ ... ], Jean-Philippe Thiran

Emotion Modulation of Visual Attention: Categorical and Temporal Characteristics

Bethany G. Ciesielski, Thomas Armstrong, David H. Zald, Bunmi O. Olatunji

jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web

Samuel A. Smits, Cleber C. Ouverney

Interplay between Affect and Arousal in Recognition Memory

Ciara M. Greene, Pooja Bahri, David Soto

Estimating and Modelling Bias of the Hierarchical Partitioning Public-Domain Software: Implications in Environmental Management and Conservation

Pedro P. Olea, Patricia Mateo-Tomás, Ángel de Frutos

Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

Elizabeth G. Wilbanks, Marc T. Facciotti

A Software Tool to Model Genetic Regulatory Networks. Applications to the Modeling of Threshold Phenomena and of Spatial Patterning in Drosophila

Rui Dilão, Daniele Muraro

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, [ ... ], Bjoern Peters

TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web

Ralph Pethica, Gary Barker, Tim Kovacs, Julian Gough

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