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Software tools

iCanPlot: Visual Exploration of High-Throughput Omics Data Using Interactive Canvas Plotting

Amit U. Sinha, Scott A. Armstrong

published 29 Feb 2012

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Electrostatic Contribution of Surface Charge Residues to the Stability of a Thermophilic Protein: Benchmarking Experimental and Predicted pKa Values

Chi-Ho Chan, Cecily C. Wilbanks, George I. Makhatadze, Kam-Bo Wong

published 18 Jan 2012

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Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R

Willemijn M. Passtoors, Judith M. Boer, Jelle J. Goeman, Erik B. van den Akker, Joris Deelen, Bas J. Zwaan, Ann Scarborough, Ruud van der Breggen, Rolf H. A. M. Vossen, Jeanine J. Houwing-Duistermaat, Gert Jan B. van Ommen, Rudi G. J. Westendorp, Diana van Heemst, Anton J. M. de Craen, Andrew J. White, David A. Gunn, Marian Beekman, P. Eline Slagboom

published 11 Jan 2012

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The Time Course of Attention: Selection Is Transient

Anna Wilschut, Jan Theeuwes, Christian N. L. Olivers

published 18 Nov 2011

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Selection of Stable Reference Genes for Quantitative RT-PCR Comparisons of Mouse Embryonic and Extra-Embryonic Stem Cells

Kylee J. Veazey, Michael C. Golding

published 10 Nov 2011

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A TMA De-Arraying Method for High Throughput Biomarker Discovery in Tissue Research

Yinhai Wang, Kienan Savage, Claire Grills, Andrena McCavigan, Jacqueline A. James, Dean A. Fennell, Peter W. Hamilton

published 07 Oct 2011

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AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

Jiantao Shi, Wentao Yang, Mingjie Chen, Yanzhi Du, Ji Zhang, Kankan Wang

published 12 Sep 2011

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Minor Physical Anomalies in Patients with Schizophrenia, Unaffected First-Degree Relatives, and Healthy Controls: A Meta-Analysis

Ting Xu, Raymond C. K. Chan, Michael T. Compton

published 08 Sep 2011

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Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

Sidhartha Chaudhury, Monica Berrondo, Brian D. Weitzner, Pravin Muthu, Hannah Bergman, Jeffrey J. Gray

published 02 Aug 2011

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REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek, Matko Bošnjak, Nives Škunca, Tomislav Šmuc

published 18 Jul 2011

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Computational Analysis of the Spatiotemporal Coordination of Polarized PI3K and Rac1 Activities in Micro-Patterned Live Cells

Shaoying Lu, Tae-jin Kim, Chih-En Chen, Mingxing Ouyang, Jihye Seong, Xiaoling Liao, Yingxiao Wang

published 27 Jun 2011

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SAGES: A Suite of Freely-Available Software Tools for Electronic Disease Surveillance in Resource-Limited Settings

Sheri L. Lewis, Brian H. Feighner, Wayne A. Loschen, Richard A. Wojcik, Joseph F. Skora, Jacqueline S. Coberly, David L. Blazes

published 10 May 2011

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GPS-CCD: A Novel Computational Program for the Prediction of Calpain Cleavage Sites

Zexian Liu, Jun Cao, Xinjiao Gao, Qian Ma, Jian Ren, Yu Xue

published 20 Apr 2011

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