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Software tools

Simplified Generation of Biomedical 3D Surface Model Data for Embedding into 3D Portable Document Format (PDF) Files for Publication and Education

Axel Newe, Thomas Ganslandt

published 15 Nov 2013

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Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data

Peter Husen, Kirill Tarasov, Maciej Katafiasz, Elena Sokol, Johannes Vogt, Jan Baumgart, Robert Nitsch, Kim Ekroos, Christer S. Ejsing

published 07 Nov 2013

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AAscan, PCRdesign and MutantChecker: A Suite of Programs for Primer Design and Sequence Analysis for High-Throughput Scanning Mutagenesis

Dawei Sun, Martin K. Ostermaier, Franziska M. Heydenreich, Daniel Mayer, Rolf Jaussi, Joerg Standfuss, Dmitry B. Veprintsev

published 30 Oct 2013

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An Open Source Based High Content Screening Method for Cell Biology Laboratories Investigating Cell Spreading and Adhesion

Andre Schmandke, Antonio Schmandke, Maurianne A. Pietro, Martin E. Schwab

published 21 Oct 2013

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Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation

Matthew B. Biggs, Jason A. Papin

published 17 Oct 2013

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Training Reveals the Sources of Stroop and Flanker Interference Effects

Antao Chen, Dandan Tang, Xuefei Chen

published 11 Oct 2013

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Embedding and Publishing Interactive, 3-Dimensional, Scientific Figures in Portable Document Format (PDF) Files

David G. Barnes, Michail Vidiassov, Bernhard Ruthensteiner, Christopher J. Fluke, Michelle R. Quayle, Colin R. McHenry

published 25 Sep 2013

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Comprehensive Quantitative Analysis on Privacy Leak Behavior

Lejun Fan, Yuanzhuo Wang, Xiaolong Jin, Jingyuan Li, Xueqi Cheng, Shuyuan Jin

published 16 Sep 2013

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marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in R

Eric Pante, Benoit Simon-Bouhet

published 03 Sep 2013

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ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers

Francois Besnier, Kevin A. Glover

published 29 Jul 2013

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TCW: Transcriptome Computational Workbench

Carol Soderlund, William Nelson, Mark Willer, David R. Gang

published 17 Jul 2013

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The PyRosetta Toolkit: A Graphical User Interface for the Rosetta Software Suite

Jared Adolf-Bryfogle, Roland L. Dunbrack Jr.

published 09 Jul 2013

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ScriptingRT: A Software Library for Collecting Response Latencies in Online Studies of Cognition

Thomas W. Schubert, Carla Murteira, Elizabeth C. Collins, Diniz Lopes

published 21 Jun 2013

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