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Software tools

PD5: A General Purpose Library for Primer Design Software

Michael C. Riley, Wayne Aubrey, Michael Young, Amanda Clare

Simplified Generation of Biomedical 3D Surface Model Data for Embedding into 3D Portable Document Format (PDF) Files for Publication and Education

Axel Newe, Thomas Ganslandt

Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data

Peter Husen, Kirill Tarasov, [ ... ], Christer S. Ejsing

AAscan, PCRdesign and MutantChecker: A Suite of Programs for Primer Design and Sequence Analysis for High-Throughput Scanning Mutagenesis

Dawei Sun, Martin K. Ostermaier, [ ... ], Dmitry B. Veprintsev

An Open Source Based High Content Screening Method for Cell Biology Laboratories Investigating Cell Spreading and Adhesion

Andre Schmandke, Antonio Schmandke, Maurianne A. Pietro, Martin E. Schwab

Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation

Matthew B. Biggs, Jason A. Papin

Training Reveals the Sources of Stroop and Flanker Interference Effects

Antao Chen, Dandan Tang, Xuefei Chen

Embedding and Publishing Interactive, 3-Dimensional, Scientific Figures in Portable Document Format (PDF) Files

David G. Barnes, Michail Vidiassov, [ ... ], Colin R. McHenry

Comprehensive Quantitative Analysis on Privacy Leak Behavior

Lejun Fan, Yuanzhuo Wang, [ ... ], Shuyuan Jin

marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in R

Eric Pante, Benoit Simon-Bouhet

ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers

Francois Besnier, Kevin A. Glover

TCW: Transcriptome Computational Workbench

Carol Soderlund, William Nelson, Mark Willer, David R. Gang

The PyRosetta Toolkit: A Graphical User Interface for the Rosetta Software Suite

Jared Adolf-Bryfogle, Roland L. Dunbrack Jr.

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