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Software tools

PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

published 07 Mar 2014

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Integrated Data Management for Clinical Studies: Automatic Transformation of Data Models with Semantic Annotations for Principal Investigators, Data Managers and Statisticians

Martin Dugas, Susanne Dugas-Breit

published 28 Feb 2014

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Comprehensive Analysis to Improve the Validation Rate for Single Nucleotide Variants Detected by Next-Generation Sequencing

Mi-Hyun Park, Hwanseok Rhee, Jung Hoon Park, Hae-Mi Woo, Byung-Ok Choi, Bo-Young Kim, Ki Wha Chung, Yoo-Bok Cho, Hyung Jin Kim, Ji-Won Jung, Soo Kyung Koo

published 29 Jan 2014

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powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions

Jeff Alstott, Ed Bullmore, Dietmar Plenz

published 29 Jan 2014

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STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, Alicia R. Martin, Michael Snyder, Nicholas P. Tatonetti, Joel T. Dudley

published 15 Jan 2014

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Quilt Plots: A Simple Tool for the Visualisation of Large Epidemiological Data

Handan Wand, Jenny Iversen, Matthew Law, Lisa Maher

published 13 Jan 2014

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QuantWorm: A Comprehensive Software Package for Caenorhabditis elegans Phenotypic Assays

Sang-Kyu Jung, Boanerges Aleman-Meza, Celeste Riepe, Weiwei Zhong

published 08 Jan 2014

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ZODET: Software for the Identification, Analysis and Visualisation of Outlier Genes in Microarray Expression Data

Daniel L. Roden, Gavin W. Sewell, Anna Lobley, Adam P. Levine, Andrew M. Smith, Anthony W. Segal

published 08 Jan 2014

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Measuring Software Timing Errors in the Presentation of Visual Stimuli in Cognitive Neuroscience Experiments

Pablo Garaizar, Miguel A. Vadillo, Diego López-de-Ipiña, Helena Matute

published 07 Jan 2014

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Labour-Efficient In Vitro Lymphocyte Population Tracking and Fate Prediction Using Automation and Manual Review

Rajib Chakravorty, David Rawlinson, Alan Zhang, John Markham, Mark R. Dowling, Cameron Wellard, Jie H. S. Zhou, Philip D. Hodgkin

published 03 Jan 2014

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Temporal Learning and List-Level Proportion Congruency: Conflict Adaptation or Learning When to Respond?

James R. Schmidt

published 28 Nov 2013

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Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome

Daniel Garijo, Sarah Kinnings, Li Xie, Lei Xie, Yinliang Zhang, Philip E. Bourne, Yolanda Gil

published 27 Nov 2013

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PD5: A General Purpose Library for Primer Design Software

Michael C. Riley, Wayne Aubrey, Michael Young, Amanda Clare

published 21 Nov 2013

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