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Software tools

sgRNAcas9: A Software Package for Designing CRISPR sgRNA and Evaluating Potential Off-Target Cleavage Sites

Shengsong Xie, Bin Shen, Chaobao Zhang, Xingxu Huang, Yonglian Zhang

published 23 Jun 2014

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New Method for Automatic Body Length Measurement of the Collembolan, Folsomia candida Willem 1902 (Insecta: Collembola)

Oxána Bánszegi, András Kosztolányi, Gábor Bakonyi, Borbála Szabó, Miklós Dombos

published 05 Jun 2014

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RNAbrowse: RNA-Seq De Novo Assembly Results Browser

Jérôme Mariette, Céline Noirot, Ibounyamine Nabihoudine, Philippe Bardou, Claire Hoede, Anis Djari, Cédric Cabau, Christophe Klopp

published 13 May 2014

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Validation of Potential Reference Genes for qPCR in Maize across Abiotic Stresses, Hormone Treatments, and Tissue Types

Yueai Lin, Chenlu Zhang, Hai Lan, Shibin Gao, Hailan Liu, Jian Liu, Moju Cao, Guangtang Pan, Tingzhao Rong, Suzhi Zhang

published 08 May 2014

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ss3sim: An R Package for Fisheries Stock Assessment Simulation with Stock Synthesis

Sean C. Anderson, Cole C. Monnahan, Kelli F. Johnson, Kotaro Ono, Juan L. Valero

published 03 Apr 2014

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Open Source Software to Control Bioflo Bioreactors

David A. Burdge, Igor G. L. Libourel

published 25 Mar 2014

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PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

published 07 Mar 2014

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Integrated Data Management for Clinical Studies: Automatic Transformation of Data Models with Semantic Annotations for Principal Investigators, Data Managers and Statisticians

Martin Dugas, Susanne Dugas-Breit

published 28 Feb 2014

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Comprehensive Analysis to Improve the Validation Rate for Single Nucleotide Variants Detected by Next-Generation Sequencing

Mi-Hyun Park, Hwanseok Rhee, Jung Hoon Park, Hae-Mi Woo, Byung-Ok Choi, Bo-Young Kim, Ki Wha Chung, Yoo-Bok Cho, Hyung Jin Kim, Ji-Won Jung, Soo Kyung Koo

published 29 Jan 2014

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powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions

Jeff Alstott, Ed Bullmore, Dietmar Plenz

published 29 Jan 2014

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STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, Alicia R. Martin, Michael Snyder, Nicholas P. Tatonetti, Joel T. Dudley

published 15 Jan 2014

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Quilt Plots: A Simple Tool for the Visualisation of Large Epidemiological Data

Handan Wand, Jenny Iversen, Matthew Law, Lisa Maher

published 13 Jan 2014

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QuantWorm: A Comprehensive Software Package for Caenorhabditis elegans Phenotypic Assays

Sang-Kyu Jung, Boanerges Aleman-Meza, Celeste Riepe, Weiwei Zhong

published 08 Jan 2014

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