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Software tools

A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data

Zong Hong Zhang, Dhanisha J. Jhaveri, Vikki M. Marshall, Denis C. Bauer, Janette Edson, Ramesh K. Narayanan, Gregory J. Robinson, Andreas E. Lundberg, Perry F. Bartlett, Naomi R. Wray, Qiong-Yi Zhao

published 13 Aug 2014

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The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet

Tim Robertson, Markus Döring, Robert Guralnick, David Bloom, John Wieczorek, Kyle Braak, Javier Otegui, Laura Russell, Peter Desmet

published 06 Aug 2014

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These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

Qingpeng Zhang, Jason Pell, Rosangela Canino-Koning, Adina Chuang Howe, C. Titus Brown

published 25 Jul 2014

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PANET: A GPU-Based Tool for Fast Parallel Analysis of Robustness Dynamics and Feed-Forward/Feedback Loop Structures in Large-Scale Biological Networks

Hung-Cuong Trinh, Duc-Hau Le, Yung-Keun Kwon

published 24 Jul 2014

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fcGENE: A Versatile Tool for Processing and Transforming SNP Datasets

Nab Raj Roshyara, Markus Scholz

published 22 Jul 2014

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Imine Resveratrol Analogues: Molecular Design, Nrf2 Activation and SAR Analysis

Chang Li, Xiaofei Xu, Xiu Jun Wang, Yuanjiang Pan

published 16 Jul 2014

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QSAR-Based Models for Designing Quinazoline/Imidazothiazoles/Pyrazolopyrimidines Based Inhibitors against Wild and Mutant EGFR

Jagat Singh Chauhan, Sandeep Kumar Dhanda, Deepak Singla, Open Source Drug Discovery Consortium , Subhash M. Agarwal, Gajendra P. S. Raghava

published 03 Jul 2014

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Fluorescence2D: Software for Accelerated Acquisition and Analysis of Two-Dimensional Fluorescence Spectra

Evgenii L. Kovrigin

published 01 Jul 2014

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LADES: A Software for Constructing and Analyzing Longitudinal Designs in Biomedical Research

Alan Vázquez-Alcocer, Daniel Ladislao Garzón-Cortes, Rosa María Sánchez-Casas

published 01 Jul 2014

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sgRNAcas9: A Software Package for Designing CRISPR sgRNA and Evaluating Potential Off-Target Cleavage Sites

Shengsong Xie, Bin Shen, Chaobao Zhang, Xingxu Huang, Yonglian Zhang

published 23 Jun 2014

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New Method for Automatic Body Length Measurement of the Collembolan, Folsomia candida Willem 1902 (Insecta: Collembola)

Oxána Bánszegi, András Kosztolányi, Gábor Bakonyi, Borbála Szabó, Miklós Dombos

published 05 Jun 2014

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RNAbrowse: RNA-Seq De Novo Assembly Results Browser

Jérôme Mariette, Céline Noirot, Ibounyamine Nabihoudine, Philippe Bardou, Claire Hoede, Anis Djari, Cédric Cabau, Christophe Klopp

published 13 May 2014

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Validation of Potential Reference Genes for qPCR in Maize across Abiotic Stresses, Hormone Treatments, and Tissue Types

Yueai Lin, Chenlu Zhang, Hai Lan, Shibin Gao, Hailan Liu, Jian Liu, Moju Cao, Guangtang Pan, Tingzhao Rong, Suzhi Zhang

published 08 May 2014

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