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Software tools

sgRNAcas9: A Software Package for Designing CRISPR sgRNA and Evaluating Potential Off-Target Cleavage Sites

Shengsong Xie, Bin Shen, [ ... ], Yonglian Zhang

New Method for Automatic Body Length Measurement of the Collembolan, Folsomia candida Willem 1902 (Insecta: Collembola)

Oxána Bánszegi, András Kosztolányi, [ ... ], Miklós Dombos

RNAbrowse: RNA-Seq De Novo Assembly Results Browser

Jérôme Mariette, Céline Noirot, [ ... ], Christophe Klopp

Validation of Potential Reference Genes for qPCR in Maize across Abiotic Stresses, Hormone Treatments, and Tissue Types

Yueai Lin, Chenlu Zhang, [ ... ], Suzhi Zhang

ss3sim: An R Package for Fisheries Stock Assessment Simulation with Stock Synthesis

Sean C. Anderson, Cole C. Monnahan, [ ... ], Juan L. Valero

Open Source Software to Control Bioflo Bioreactors

David A. Burdge, Igor G. L. Libourel

PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

Integrated Data Management for Clinical Studies: Automatic Transformation of Data Models with Semantic Annotations for Principal Investigators, Data Managers and Statisticians

Martin Dugas, Susanne Dugas-Breit

Comprehensive Analysis to Improve the Validation Rate for Single Nucleotide Variants Detected by Next-Generation Sequencing

Mi-Hyun Park, Hwanseok Rhee, [ ... ], Soo Kyung Koo

powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions

Jeff Alstott, Ed Bullmore, Dietmar Plenz

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

Quilt Plots: A Simple Tool for the Visualisation of Large Epidemiological Data

Handan Wand, Jenny Iversen, Matthew Law, Lisa Maher

QuantWorm: A Comprehensive Software Package for Caenorhabditis elegans Phenotypic Assays

Sang-Kyu Jung, Boanerges Aleman-Meza, Celeste Riepe, Weiwei Zhong

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