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Software tools

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Hugo Varet, Loraine Brillet-Guéguen, Jean-Yves Coppée, Marie-Agnès Dillies

Locally Downscaled and Spatially Customizable Climate Data for Historical and Future Periods for North America

Tongli Wang, Andreas Hamann, Dave Spittlehouse, Carlos Carroll

OFFl Models: Novel Schema for Dynamical Modeling of Biological Systems

C. Brandon Ogbunugafor, Sean P. Robinson

Mitigation of Variability among 3D Echocardiography-Derived Regional Strain Values Acquired by Multiple Ultrasound Systems by Vendor Independent Analysis

Cole Streiff, Meihua Zhu, [ ... ], Muhammad Ashraf

Procedure for Detecting Outliers in a Circular Regression Model

Adzhar Rambli, Ali H. M. Abuzaid, Ibrahim Bin Mohamed, Abdul Ghapor Hussin

SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools

Peter Blattmann, Moritz Heusel, Ruedi Aebersold

Maximum Parsimony and the Skewness Test: A Simulation Study of the Limits of Applicability

Jussi Määttä, Teemu Roos

Fully Automated Pulmonary Lobar Segmentation: Influence of Different Prototype Software Programs onto Quantitative Evaluation of Chronic Obstructive Lung Disease

Hyun-ju Lim, Oliver Weinheimer, [ ... ], Claus Peter Heussel

MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant

Tao Zhou, Chuyu Li, [ ... ], Jiahao Sha

Ranking of Business Process Simulation Software Tools with DEX/QQ Hierarchical Decision Model

Nadja Damij, Pavle Boškoski, Marko Bohanec, Biljana Mileva Boshkoska

Comparing the Effects of Different Smoothing Algorithms on the Assessment of Dimensionality of Ordered Categorical Items with Parallel Analysis

Rudolf Debelak, Ulrich S. Tran

CERENA: ChEmical REaction Network Analyzer—A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics

Atefeh Kazeroonian, Fabian Fröhlich, [ ... ], Jan Hasenauer

Effects of Photo and Genotype-Based Misidentification Error on Estimates of Survival, Detection and State Transition using Multistate Survival Models

Kristopher J. Winiarski, Kevin McGarigal

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