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Software tools

A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences

Emine Toparslan, Kemal Karabag, Ugur Bilge

published 15 Dec 2020

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Comparison of the within-reader and inter-vendor agreement of left ventricular circumferential strains and volume indices derived from cardiovascular magnetic resonance imaging

Doyin S. Mansell, Evelyn G. Frank, Nathaniel S. Kelly, Bruno Agostinho-Hernandez, James Fletcher, Vito D. Bruno, Eva Sammut, Amedeo Chiribiri, Thomas Johnson, Raimondo Ascione, Jonathan W. Bartlett, Harinderjit S. Gill, Katharine H. Fraser, Andrew N. Cookson

published 15 Dec 2020

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Survey of metaproteomics software tools for functional microbiome analysis

Ray Sajulga, Caleb Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James Johnson, Bjoern Andreas Gruening, Henning Schiebenhoefer, Carolin A. Kolmeder, Stephan Fuchs, Brook L. Nunn, Joel Rudney, Timothy J. Griffin, Pratik D. Jagtap

published 10 Nov 2020

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OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry

Gabriel Cardona, Ramon Pujol-Nadal

published 14 Oct 2020

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Validation of the Polar V800 heart rate monitor and comparison of artifact correction methods among adults with hypertension

Burak Cilhoroz, David Giles, Amanda Zaleski, Beth Taylor, Bo Fernhall, Linda Pescatello

published 08 Oct 2020

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Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions

Ray-Bing Chen, Ping-Yang Chen, Cheng-Lin Hsu, Weng Kee Wong

published 05 Oct 2020

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A non-parametric effect-size measure capturing changes in central tendency and data distribution shape

Jörn Lötsch, Alfred Ultsch

published 24 Sep 2020

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SSNdesign—An R package for pseudo-Bayesian optimal and adaptive sampling designs on stream networks

Alan R. Pearse, James M. McGree, Nicholas A. Som, Catherine Leigh, Paul Maxwell, Jay M. Ver Hoef, Erin E. Peterson

published 22 Sep 2020

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BD5: An open HDF5-based data format to represent quantitative biological dynamics data

Koji Kyoda, Kenneth H. L. Ho, Yukako Tohsato, Hiroya Itoga, Shuichi Onami

published 12 Aug 2020

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RandoMice, a novel, user-friendly randomization tool in animal research

Robin van Eenige, Peternella S. Verhave, Peter J. Koemans, Ivo A. C. W. Tiebosch, Patrick C. N. Rensen, Sander Kooijman

published 05 Aug 2020

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Adaptability and stability evaluation of maize hybrids using Bayesian segmented regression models

Tâmara Rebecca A. Oliveira, Hélio Wilson L. Carvalho, Moysés Nascimento, Emiliano Fernandes N. Costa, Gustavo Hugo F. Oliveira, Geraldo A. Gravina, Antonio T. Amaral Junior, José Luiz S. Carvalho Filho

published 30 Jul 2020

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Changes in infant non-nutritive sucking throughout a suck sample at 3-months of age

Emily Zimmerman, Thomas Carpenito, Alaina Martens

published 09 Jul 2020

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Experimental setup and image processing method for automatic enumeration of bacterial colonies on agar plates

Lola Hogekamp, Stefan H. Hogekamp, Mario R. Stahl

published 24 Jun 2020

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