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Software tools

An efficient General Transit Feed Specification (GTFS) enabled algorithm for dynamic transit accessibility analysis

S. Kiavash Fayyaz S., Xiaoyue Cathy Liu, Guohui Zhang

TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web

Ralph Pethica, Gary Barker, Tim Kovacs, Julian Gough

Temporal interpolation alters motion in fMRI scans: Magnitudes and consequences for artifact detection

Jonathan D. Power, Mark Plitt, [ ... ], Alex Martin

GPS-CCD: A Novel Computational Program for the Prediction of Calpain Cleavage Sites

Zexian Liu, Jun Cao, [ ... ], Yu Xue

Reference Gene Selection for Real-Time Quantitative PCR Analysis of the Mouse Uterus in the Peri-Implantation Period

PengFei Lin, XiangLi Lan, [ ... ], AiHua Wang

Emotion Modulation of Visual Attention: Categorical and Temporal Characteristics

Bethany G. Ciesielski, Thomas Armstrong, David H. Zald, Bunmi O. Olatunji

pvsR: An Open Source Interface to Big Data on the American Political Sphere

Ulrich Matter, Alois Stutzer

MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant

Tao Zhou, Chuyu Li, [ ... ], Jiahao Sha

Health technology assessment for sexual reproductive health and rights benefits package design in sub-Saharan Africa: A scoping review of evidence-informed deliberative processes

Warren Mukelabai Simangolwa, Josue Mbonigaba, Kaymarlin Govender

FragIt: A Tool to Prepare Input Files for Fragment Based Quantum Chemical Calculations

Casper Steinmann, Mikael W. Ibsen, Anne S. Hansen, Jan H. Jensen

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Sven Warris, N. Roshan N. Timal, [ ... ], Jan-Peter Nap

Selection of Reference Genes for Quantitative Gene Expression Studies in Platycladus orientalis (Cupressaceae) Using Real-Time PCR

Ermei Chang, Shengqing Shi, [ ... ], Zeping Jiang

No-U-turn sampling for fast Bayesian inference in ADMB and TMB: Introducing the adnuts and tmbstan R packages

Cole C. Monnahan, Kasper Kristensen

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