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Software tools

Hollow-tree super: A directional and scalable approach for feature importance in boosted tree models

Stephane Doyen, Hugh Taylor, Peter Nicholas, Lewis Crawford, Isabella Young, Michael E. Sughrue

published 25 Oct 2021

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Signal-based optical map alignment

Mehmet Akdel, Henri van de Geest, Elio Schijlen, Irma M. H. van Rijswijck, Eddy J. Smid, Gabino Sanchez-Perez, Dick de Ridder

published 30 Sep 2021

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Pixelwise H-score: A novel digital image analysis-based metric to quantify membrane biomarker expression from immunohistochemistry images

Sripad Ram, Pamela Vizcarra, Pamela Whalen, Shibing Deng, C. L. Painter, Amy Jackson-Fisher, Steven Pirie-Shepherd, Xiaoling Xia, Eric L. Powell

published 27 Sep 2021

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easyXpress: An R package to analyze and visualize high-throughput C. elegans microscopy data generated using CellProfiler

Joy Nyaanga, Timothy A. Crombie, Samuel J. Widmayer, Erik C. Andersen

published 12 Aug 2021

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Team numerical advantage in Australian rules football: A missing piece of the scoring puzzle?

Jeremy P. Alexander, Timothy Bedin, Karl B. Jackson, Sam Robertson

published 16 Jul 2021

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DUNEuro—A software toolbox for forward modeling in bioelectromagnetism

Sophie Schrader, Andreas Westhoff, Maria Carla Piastra, Tuuli Miinalainen, Sampsa Pursiainen, Johannes Vorwerk, Heinrich Brinck, Carsten H. Wolters, Christian Engwer

published 04 Jun 2021

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Application of machine learning approaches to administrative claims data to predict clinical outcomes in medical and surgical patient populations

Emily J. MacKay, Michael D. Stubna, Corey Chivers, Michael E. Draugelis, William J. Hanson, Nimesh D. Desai, Peter W. Groeneveld

published 03 Jun 2021

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Data management and sharing: Practices and perceptions of psychology researchers

John A. Borghi, Ana E. Van Gulick

published 21 May 2021

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Vectorial application for the illustration of archaeological lithic artefacts using the “Stone Tools Illustrations with Vector Art” (STIVA) Method

Jacopo Niccolò Cerasoni

published 11 May 2021

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Effect of different thresholds for CT perfusion volumetric analysis on estimated ischemic core and penumbral volumes

Simo Karhi, Olli Tähtinen, Joona Aherto, Hanna Matikka, Hannu Manninen, Ossi Nerg, Mikko Taina, Pekka Jäkälä, Ritva Vanninen

published 21 Apr 2021

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OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry

Angelica Arioli, Arianna Dagliati, Bethany Geary, Niels Peek, Philip A. Kalra, Anthony D. Whetton, Nophar Geifman

published 15 Apr 2021

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Interpreting blood GLUcose data with R package iglu

Steven Broll, Jacek Urbanek, David Buchanan, Elizabeth Chun, John Muschelli, Naresh M. Punjabi, Irina Gaynanova

published 01 Apr 2021

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Assessing the impacts of short-course multidrug-resistant tuberculosis treatment in the Southeast Asia Region using a mathematical modeling approach

Win Min Han, Wiriya Mahikul, Thomas Pouplin, Saranath Lawpoolsri, Lisa J. White, Wirichada Pan-Ngum

published 26 Mar 2021

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