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Software engineering

Deep Rooting In-Situ Expansion of mtDNA Haplogroup R8 in South Asia

Kumarasamy Thangaraj, Amrita Nandan, Vishwas Sharma, Varun Kumar Sharma, Muthukrishnan Eaaswarkhanth, Pradeep Kumar Patra, Sandhya Singh, Sashi Rekha, Monika Dua, Narendra Verma, Alla G. Reddy, Lalji Singh

published 07 Aug 2009

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Mining Biological Pathways Using WikiPathways Web Services

Thomas Kelder, Alexander R. Pico, Kristina Hanspers, Martijn P. van Iersel, Chris Evelo, Bruce R. Conklin

published 30 Jul 2009

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Large Scale Application of Neural Network Based Semantic Role Labeling for Automated Relation Extraction from Biomedical Texts

Thorsten Barnickel, Jason Weston, Ronan Collobert, Hans-Werner Mewes, Volker Stümpflen

published 28 Jul 2009

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Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling

Nicola Palmieri, Christian Schlötterer

published 28 Jul 2009

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Differential Micro RNA Expression in PBMC from Multiple Sclerosis Patients

David Otaegui, Sergio E. Baranzini, Ruben Armañanzas, Borja Calvo, Maider Muñoz-Culla, Puya Khankhanian, Iñaki Inza, Jose A. Lozano, Tamara Castillo-Triviño, Ana Asensio, Javier Olaskoaga, Adolfo López de Munain

published 20 Jul 2009

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PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

Michael S. Lee, Rajkumar Bondugula, Valmik Desai, Nela Zavaljevski, In-Chul Yeh, Anders Wallqvist, Jaques Reifman

published 16 Jul 2009

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Evidence of Molecular Evolution Driven by Recombination Events Influencing Tropism in a Novel Human Adenovirus that Causes Epidemic Keratoconjunctivitis

Michael P. Walsh, Ashish Chintakuntlawar, Christopher M. Robinson, Ijad Madisch, Balázs Harrach, Nolan R. Hudson, David Schnurr, Albert Heim, James Chodosh, Donald Seto, Morris S. Jones

published 03 Jun 2009

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Genetic Diversity of Staphylocoagulase Genes (coa): Insight into the Evolution of Variable Chromosomal Virulence Factors in Staphylococcus aureus

Shinya Watanabe, Teruyo Ito, Takashi Sasaki, Shanshuang Li, Ikuo Uchiyama, Kozue Kishii, Ken Kikuchi, Robert Leo Skov, Keiichi Hiramatsu

published 27 May 2009

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Semi-Automated Reconstruction of Neural Processes from Large Numbers of Fluorescence Images

Ju Lu, John C. Fiala, Jeff W. Lichtman

published 21 May 2009

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Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples

Balazs Gyorffy, Bela Molnar, Hermann Lage, Zoltan Szallasi, Aron C. Eklund

published 21 May 2009

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Spatial Representations Are Specific to Different Domains of Knowledge

Rowena Beecham, Robert A. Reeve, Sarah J. Wilson

published 20 May 2009

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Intra-Platform Repeatability and Inter-Platform Comparability of MicroRNA Microarray Technology

Fumiaki Sato, Soken Tsuchiya, Kazuya Terasawa, Gozoh Tsujimoto

published 14 May 2009

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Genome-Wide Association Study of Young-Onset Hypertension in the Han Chinese Population of Taiwan

Hsin-Chou Yang, Yu-Jen Liang, Yi-Lin Wu, Chia-Min Chung, Kuang-Mao Chiang, Hung-Yun Ho, Chih-Tai Ting, Tsung-Hsien Lin, Sheng-Hsiung Sheu, Wei-Chuan Tsai, Jyh-Hong Chen, Hsin-Bang Leu, Wei-Hsian Yin, Ting-Yu Chiu, Chin-Iuan Chen, Cathy S. J. Fann, Jer-Yuarn Wu, Teng-Nan Lin, Shing-Jong Lin, Yuan-Tsong Chen, Jaw-Wen Chen, Wen-Harn Pan

published 07 May 2009

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