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Single nucleotide polymorphisms

A genome-wide SNP-SNP interaction analysis exploring novel interacting loci associated with the risk of recurrence in colorectal cancer

Aaron A. Curtis, Yajun Yu, Megan Carey, Yildiz E. Yilmaz, Sevtap Savas

published 18 Jun 2025

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Verification of emerging genomic mutations in Mycobacterium tuberculosis allows transmission chains to be distinguished in an epidemiological typing cluster extending over thirty years

Rina de Zwaan, Gerard de Vries, Ella Ubbelohde, Arnout Mulder, Miranda Kamst-van Agterveld, Karin Rebel, Saskia Kautz, Kristin Kremer, Richard M. Anthony, Dick van Soolingen

published 18 Jun 2025

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EPHX1 and ERCC2 polymorphisms are associated with cisplatin-induced nephrotoxicity and prognosis in Thai cancer patients

Saad Ahmed, Jakris Eu-ahsunthornwattana, Thanaporn Thamrongjirapat, Aruchalean Taweewongsounton, Yutthana Rittavee, Nintita Sripaiboonkit Thokanit, Montien Ngodngamthaweesuk, Pitichote Hiranyatheb, Thanyanan Reungwetwattana, Nuttapong Ngamphaiboon, Natini Jinawath

published 17 Jun 2025

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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data

Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B. Hall, Simon Grandjean Lapierre

published 16 Jun 2025

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Genome-wide molecular fingerprinting reveals local geographical genetic patterns in the North American angiosperm genus Triosteum (Caprifoliaceae)

Tom Ruttink, Bryan Connolly, Kurt Lamour, Jonathan Hulvey, Yves Bawin, Erin C. Hilley, Peter Tandy

published 16 Jun 2025

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Genomic insights into runs of homozygosity, effective population size and selection signatures in Iranian meat and dairy sheep breeds

Zohre Yousefi, Mohammad Hossein Moradi, Mohammad Taghi Beige-Nasiri, Masoud Shirali, Rostam Abdollahi-Arpanahi

published 11 Jun 2025

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Leveraging molecular-QTL co-association to predict novel disease-associated genetic loci using a graph convolutional neural network

Julian Ng-Kee-Kwong, Andrew D. Bretherick

published 10 Jun 2025

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Computational investigation unveils pathogenic LIG3 non-synonymous mutations and therapeutic targets in acute myeloid leukemia

Md. Arif Hossen, Umme Mim Sad Jahan, Md. Arju Hossain, Khalid Hossain Asif, Ahona Rahman, Sabbir Ahmed, Md. Moin Uddin, Md Faisal Amin, Muhammad Abdul Barik, Mohammod Johirul Islam, Mohammad Kamruzzaman, Soharth Hasnat, Mohammad Nasir Uddin, Tofazzal Islam, M. Nazmul Hoque

published 10 Jun 2025

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Machine learning techniques for continuous genetic assignment of geographic origin of forest trees

Bernd Degen, Yulai Yanbaev, Niels A. Müller

published 06 Jun 2025

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Screening of a core SNP set for the seedling identification of Saccharina japonica cultivars in northern China

Xiangyu Wang, Aihuan Song, Wenxi Zhao, Xiaohui Liu, Fang Lü

published 03 Jun 2025

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AD-GCN: A novel graph convolutional network integrating multi-omics data for enhanced Alzheimer’s disease diagnosis

Zilu Li, Qingyun Li, Xiaoqing Li, Wei Luo, Haiyan Guo, Chunyan Zhao, Canzhen Yang, Anke Xie, Kai Hu, Yangfan Guo

published 02 Jun 2025

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Phenome-wide association study and functional annotation of hemoglobin A1c-associated variants in African populations

Chisom Soremekun, Oyesola Ojewunmi, Amarachukwu Nwagbata, Homa Bazireh, Sapna Sharma, Daudi Jjingo, David Patrick Kateete, Oyekanmi Nash, Harald Grallert, Chiara Batini, Annette Peters, Segun Fatumo

published 30 May 2025

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DNA sequencing of whole human cytomegalovirus genomes from formalin-fixed, paraffin-embedded tissues from congenital cytomegalovirus disease cases

Kathy K. Li, Nicolás M. Suárez, Salvatore Camiolo, Andrew J. Davison, Richard J. Orton

published 30 May 2025

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