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Single nucleotide polymorphisms

Optimizing genomic diversity assessments for conservation of Bromus auleticus (Trinius ex Nees) using individual and pooled sequencing

Luciana Gillman, Federico Condón, Cesar Petroli, Mercedes Rivas

published 25 Jun 2025

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Genetic markers for knee osteoarthritis presence are not associated with disease progression - data from the IMI-APPROACH cohort

Mieke L. M. Bentvelzen, Paco M.J. Welsing, Philippe Moingeon, Simon C. Mastbergen, Margreet Kloppenburg, Francisco J. Blanco, Ida K. Haugen, Francis Berenbaum, Hae-Won Uh, Mylène P. Jansen, Said el Bouhaddani

published 24 Jun 2025

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Development and accuracy assessment of molecular markers associated with crown rust resistance genes in oat

Rawnaq N. Chowdhury, Raja Sekhar Nandety, Belayneh Admassu Yimer, Jason Fiedler, Suraj Sapkota, Kathy Esvelt Klos

published 23 Jun 2025

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A genome-wide SNP-SNP interaction analysis exploring novel interacting loci associated with the risk of recurrence in colorectal cancer

Aaron A. Curtis, Yajun Yu, Megan Carey, Yildiz E. Yilmaz, Sevtap Savas

published 18 Jun 2025

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Verification of emerging genomic mutations in Mycobacterium tuberculosis allows transmission chains to be distinguished in an epidemiological typing cluster extending over thirty years

Rina de Zwaan, Gerard de Vries, Ella Ubbelohde, Arnout Mulder, Miranda Kamst-van Agterveld, Karin Rebel, Saskia Kautz, Kristin Kremer, Richard M. Anthony, Dick van Soolingen

published 18 Jun 2025

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EPHX1 and ERCC2 polymorphisms are associated with cisplatin-induced nephrotoxicity and prognosis in Thai cancer patients

Saad Ahmed, Jakris Eu-ahsunthornwattana, Thanaporn Thamrongjirapat, Aruchalean Taweewongsounton, Yutthana Rittavee, Nintita Sripaiboonkit Thokanit, Montien Ngodngamthaweesuk, Pitichote Hiranyatheb, Thanyanan Reungwetwattana, Nuttapong Ngamphaiboon, Natini Jinawath

published 17 Jun 2025

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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data

Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B. Hall, Simon Grandjean Lapierre

published 16 Jun 2025

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Genome-wide molecular fingerprinting reveals local geographical genetic patterns in the North American angiosperm genus Triosteum (Caprifoliaceae)

Tom Ruttink, Bryan Connolly, Kurt Lamour, Jonathan Hulvey, Yves Bawin, Erin C. Hilley, Peter Tandy

published 16 Jun 2025

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Genomic insights into runs of homozygosity, effective population size and selection signatures in Iranian meat and dairy sheep breeds

Zohre Yousefi, Mohammad Hossein Moradi, Mohammad Taghi Beige-Nasiri, Masoud Shirali, Rostam Abdollahi-Arpanahi

published 11 Jun 2025

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Leveraging molecular-QTL co-association to predict novel disease-associated genetic loci using a graph convolutional neural network

Julian Ng-Kee-Kwong, Andrew D. Bretherick

published 10 Jun 2025

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Computational investigation unveils pathogenic LIG3 non-synonymous mutations and therapeutic targets in acute myeloid leukemia

Md. Arif Hossen, Umme Mim Sad Jahan, Md. Arju Hossain, Khalid Hossain Asif, Ahona Rahman, Sabbir Ahmed, Md. Moin Uddin, Md Faisal Amin, Muhammad Abdul Barik, Mohammod Johirul Islam, Mohammad Kamruzzaman, Soharth Hasnat, Mohammad Nasir Uddin, Tofazzal Islam, M. Nazmul Hoque

published 10 Jun 2025

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Machine learning techniques for continuous genetic assignment of geographic origin of forest trees

Bernd Degen, Yulai Yanbaev, Niels A. Müller

published 06 Jun 2025

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Screening of a core SNP set for the seedling identification of Saccharina japonica cultivars in northern China

Xiangyu Wang, Aihuan Song, Wenxi Zhao, Xiaohui Liu, Fang Lü

published 03 Jun 2025

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