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Simulation and modeling

Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples

Balazs Gyorffy, Bela Molnar, [ ... ], Aron C. Eklund

An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome

Kyoung-Jae Won, Saurabh Agarwal, [ ... ], Wei Wang

In Silico Generation of Alternative Hypotheses Using Causal Mapping (CMAP)

Gabriel E. Weinreb, Maryna T. Kapustina, Ken Jacobson, Timothy C. Elston

Messina: A Novel Analysis Tool to Identify Biologically Relevant Molecules in Disease

Mark Pinese, Christopher J. Scarlett, [ ... ], Andrew V. Biankin

Detection of Biochemical Pathways by Probabilistic Matching of Phyletic Vectors

Hua Li, David M. Kristensen, Michael K. Coleman, Arcady Mushegian

Biological Process Linkage Networks

Dikla Dotan-Cohen, Stan Letovsky, Avraham A. Melkman, Simon Kasif

Characterizing Complex Polysera Produced by Antigen-Specific Immunization through the Use of Affinity-Selected Mimotopes

Galina Denisova, Dimitri Denisov, [ ... ], Jonathan Lorne Bramson

Correcting the Site Frequency Spectrum for Divergence-Based Ascertainment

Andrew D. Kern

A Mathematical Model for the Detection Mechanism of DNA Double-Strand Breaks Depending on Autophosphorylation of ATM

Kazunari Mouri, Jose C. Nacher, Tatsuya Akutsu

Global Pyrogeography: the Current and Future Distribution of Wildfire

Meg A. Krawchuk, Max A. Moritz, [ ... ], Katharine Hayhoe

Pattern-Selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays

Xiaorong Yang, Xiaobo Zhou, [ ... ], Stephen T. C. Wong

Reverse Engineering Time Discrete Finite Dynamical Systems: A Feasible Undertaking?

Edgar Delgado-Eckert

RBF-TSS: Identification of Transcription Start Site in Human Using Radial Basis Functions Network and Oligonucleotide Positional Frequencies

Rami N. Mahdi, Eric C. Rouchka

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