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Simulation and modeling

A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs

Minli Xu, Zhengchang Su

published 20 Jan 2010

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Dermatoglyphics from All Chinese Ethnic Groups Reveal Geographic Patterning

Hai-Guo Zhang, Yao-Fong Chen, Ming Ding, Li Jin, D. Troy Case, Yun-Ping Jiao, Xian-Ping Wang, Chong-Xian Bai, Gang Jin, Jiang-Ming Yang, Han Wang, Jian-Bing Yuan, Wei Huang, Zhu-Gang Wang, Ren-Biao Chen

published 20 Jan 2010

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Structural Analysis to Determine the Core of Hypoxia Response Network

Monika Heiner, K. Sriram

published 19 Jan 2010

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Development of a Three Dimensional Multiscale Computational Model of the Human Epidermis

Salem Adra, Tao Sun, Sheila MacNeil, Mike Holcombe, Rod Smallwood

published 14 Jan 2010

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Dynamic Networks from Hierarchical Bayesian Graph Clustering

Yongjin Park, Cristopher Moore, Joel S. Bader

published 11 Jan 2010

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Antagonistic Parent-Offspring Co-Adaptation

Mathias Kölliker, Benjamin J. Ridenhour, Sabrina Gaba

published 06 Jan 2010

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Reaction Factoring and Bipartite Update Graphs Accelerate the Gillespie Algorithm for Large-Scale Biochemical Systems

Sagar Indurkhya, Jacob Beal

published 06 Jan 2010

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Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

Melissa K. Friswell, Helen Gika, Ian J. Stratford, Georgios Theodoridis, Brian Telfer, Ian D. Wilson, Andrew J. McBain

published 05 Jan 2010

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Parameter Identifiability and Redundancy in a General Class of Stochastic Carcinogenesis Models

Mark P. Little, Wolfgang F. Heidenreich, Guangquan Li

published 31 Dec 2009

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Exploring Hypotheses of the Actions of TGF-β1 in Epidermal Wound Healing Using a 3D Computational Multiscale Model of the Human Epidermis

Tao Sun, Salem Adra, Rod Smallwood, Mike Holcombe, Sheila MacNeil

published 31 Dec 2009

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AutoEPG: Software for the Analysis of Electrical Activity in the Microcircuit Underpinning Feeding Behaviour of Caenorhabditis elegans

James Dillon, Ioannis Andrianakis, Kate Bull, Steve Glautier, Vincent O'Connor, Lindy Holden-Dye, Christopher James

published 29 Dec 2009

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Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

published 22 Dec 2009

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Vector Field Embryogeny

Till Steiner, Yaochu Jin, Bernhard Sendhoff

published 17 Dec 2009

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