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Simulation and modeling

A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs

Minli Xu, Zhengchang Su

Dermatoglyphics from All Chinese Ethnic Groups Reveal Geographic Patterning

Hai-Guo Zhang, Yao-Fong Chen, [ ... ], Ren-Biao Chen

Structural Analysis to Determine the Core of Hypoxia Response Network

Monika Heiner, K. Sriram

Development of a Three Dimensional Multiscale Computational Model of the Human Epidermis

Salem Adra, Tao Sun, [ ... ], Rod Smallwood

Dynamic Networks from Hierarchical Bayesian Graph Clustering

Yongjin Park, Cristopher Moore, Joel S. Bader

Antagonistic Parent-Offspring Co-Adaptation

Mathias Kölliker, Benjamin J. Ridenhour, Sabrina Gaba

Reaction Factoring and Bipartite Update Graphs Accelerate the Gillespie Algorithm for Large-Scale Biochemical Systems

Sagar Indurkhya, Jacob Beal

Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

Melissa K. Friswell, Helen Gika, [ ... ], Andrew J. McBain

Parameter Identifiability and Redundancy in a General Class of Stochastic Carcinogenesis Models

Mark P. Little, Wolfgang F. Heidenreich, Guangquan Li

Exploring Hypotheses of the Actions of TGF-β1 in Epidermal Wound Healing Using a 3D Computational Multiscale Model of the Human Epidermis

Tao Sun, Salem Adra, [ ... ], Sheila MacNeil

AutoEPG: Software for the Analysis of Electrical Activity in the Microcircuit Underpinning Feeding Behaviour of Caenorhabditis elegans

James Dillon, Ioannis Andrianakis, [ ... ], Christopher James

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Vector Field Embryogeny

Till Steiner, Yaochu Jin, Bernhard Sendhoff

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