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Simulation and modeling

QAPgrid: A Two Level QAP-Based Approach for Large-Scale Data Analysis and Visualization

Mario Inostroza-Ponta, Regina Berretta, Pablo Moscato

published 18 Jan 2011

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Taking Multiple Infections of Cells and Recombination into Account Leads to Small Within-Host Effective-Population-Size Estimates of HIV-1

Rajesh Balagam, Vasantika Singh, Aparna Raju Sagi, Narendra M. Dixit

published 13 Jan 2011

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A Generalized Linear Model for Estimating Spectrotemporal Receptive Fields from Responses to Natural Sounds

Ana Calabrese, Joseph W. Schumacher, David M. Schneider, Liam Paninski, Sarah M. N. Woolley

published 11 Jan 2011

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Cross-Platform Comparison of Microarray-Based Multiple-Class Prediction

Xiaohui Fan, Li Shao, Hong Fang, Weida Tong, Yiyu Cheng

published 11 Jan 2011

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Do Meio- and Macrobenthic Nematodes Differ in Community Composition and Body Weight Trends with Depth?

Jyotsna Sharma, Jeffrey Baguley, Bodil A. Bluhm, Gilbert Rowe

published 06 Jan 2011

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Extending the Implicit Association Test (IAT): Assessing Consumer Attitudes Based on Multi-Dimensional Implicit Associations

Valentin Gattol, Maria Sääksjärvi, Claus-Christian Carbon

published 05 Jan 2011

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Environmental Modeling and Exposure Assessment of Sediment-Associated Pyrethroids in an Agricultural Watershed

Yuzhou Luo, Minghua Zhang

published 05 Jan 2011

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PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing

Quan Long, Daniel C. Jeffares, Qingrun Zhang, Kai Ye, Viktoria Nizhynska, Zemin Ning, Chris Tyler-Smith, Magnus Nordborg

published 05 Jan 2011

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Sequence Alignment, Mutual Information, and Dissimilarity Measures for Constructing Phylogenies

Orion Penner, Peter Grassberger, Maya Paczuski

published 04 Jan 2011

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Robust Computational Analysis of rRNA Hypervariable Tag Datasets

Maksim Sipos, Patricio Jeraldo, Nicholas Chia, Ani Qu, A. Singh Dhillon, Michael E. Konkel, Karen E. Nelson, Bryan A. White, Nigel Goldenfeld

published 31 Dec 2010

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The Effect of Algorithms on Copy Number Variant Detection

Debby W. Tsuang, Steven P. Millard, Benjamin Ely, Peter Chi, Kenneth Wang, Wendy H. Raskind, Sulgi Kim, Zoran Brkanac, Chang-En Yu

published 30 Dec 2010

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‘SGoFicance Trace’: Assessing Significance in High Dimensional Testing Problems

Jacobo de Uña-Alvarez, Antonio Carvajal-Rodriguez

published 29 Dec 2010

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High Accuracy Decoding of Movement Target Direction in Non-Human Primates Based on Common Spatial Patterns of Local Field Potentials

Nuri F. Ince, Rahul Gupta, Sami Arica, Ahmed H. Tewfik, James Ashe, Giuseppe Pellizzer

published 21 Dec 2010

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