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Simpson index

CooccurrenceAffinity: An R package for computing a novel metric of affinity in co-occurrence data that corrects for pervasive errors in traditional indices

Kumar P. Mainali, Eric Slud

published 16 Jan 2025

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Comparing subsampling strategies for metagenomic analysis in microbial studies using amplicon sequence variants versus operational taxonomic units

Daniel Segura, Divya Sharma, Osvaldo Espin-Garcia

published 30 Dec 2024

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Dynamics of SARS-CoV-2 lineages in children and adults in 2021 and 2022

Hiie Soeorg, Aare Abroi, Taavi Päll, Liidia Dotsenko, Erik Jaaniso, Katrin Kaarna, Andrio Lahesaare, Paul Naaber, Heiki Niglas, Ott Eric Oopkaup, Hedi Peterson, Tuuli Reisberg, Olga Sadikova, Steven Smit, Ulvi Gerst Talas, Radko Avi, Irja Lutsar, Kristi Huik

published 20 Dec 2024

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Distinct fecal microbiome between wild and habitat-housed captive polar bears (Ursus maritimus): Impacts of captivity and dietary shifts

Jing Lu, Renee Petri, Dylan McCart, Amy Baxendell-Young, Stephanie Anne Collins

published 20 Nov 2024

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Seasonal insights for integrative mosquito management from multi-year baseline entomological data on Aedes aegypti in Lee County, Florida

Rachel Morreale, Steven Stenhouse, Danilo O. Carvalho, Daniel A. Hahn, Kostas Bourtzis, Aaron Lloyd, Thomas Wayne Gale, David F. Hoel

published 11 Oct 2024

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ASV vs OTUs clustering: Effects on alpha, beta, and gamma diversities in microbiome metabarcoding studies

Andrea Fasolo, Saptarathi Deb, Piergiorgio Stevanato, Giuseppe Concheri, Andrea Squartini

published 03 Oct 2024

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The efficiency of adjusting nutrient solution renewal frequency on physicochemical properties and microbial community of cucumber exudates under closed cultivation tank

Yaqing Gao, Jiajun Sang, Hao Liang, Yanhai Ji, Mingchi Liu

published 16 Aug 2024

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Gut microbial composition is altered in sarcopenia: A systematic review and meta-analysis of clinical studies

Xiaohong Mai, Shuyi Yang, Qifeng Chen, Kangkang Chen

published 06 Aug 2024

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Relating gut microbiome composition and life history metrics for pronghorn (Antilocapra americana) in the Red Desert, Wyoming

Courtney E. Buchanan, Stephanie J. Galla, Mario E. Muscarella, Jennifer S. Forbey, Adele K. Reinking, Jeffrey L. Beck

published 10 Jul 2024

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Relationship between soil and species diversity in typical forest stands in Xianrendong, Liaoning Province based on plant-soil feedback

Weixin Du, Hua Zhang

published 05 Jul 2024

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Comparison of Yamuna (India) and Mississippi River (United States of America) bacterial communities reveals greater diversity below the Yamunotri Glacier

Osvaldo Martinez, Silas R. Bergen, Jacob B. Gareis

published 05 Jul 2024

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The impact of Astragaloside IV on the inflammatory response and gut microbiota in cases of acute lung injury is examined through the utilization of the PI3K/AKT/mTOR pathway

Cheng Luo, Yuanhang Ye, Anqi Lv, Wanzhao Zuo, Yi Yang, Cheng Jiang, Jia Ke

published 02 Jul 2024

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How strongly does diet variation explain variation in isotope values of animal consumers?

Jean-François Arnoldi, Jenny Rose Bortoluzzi, Hugh Rowland, Chris Harrod, Andrew C. Parnell, Nicholas Payne, Ian Donohue, Andrew L. Jackson

published 27 Jun 2024

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