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Shotgun sequencing

Complete Genome Sequence of the Biocontrol Strain Pseudomonas protegens Cab57 Discovered in Japan Reveals Strain-Specific Diversity of This Species

Kasumi Takeuchi, Naomi Noda, Nobutaka Someya

published 02 Apr 2014

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MetaMetaDB: A Database and Analytic System for Investigating Microbial Habitability

Ching-chia Yang, Wataru Iwasaki

published 27 Jan 2014

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The Genome Sequence of the Fungal Pathogen Fusarium virguliforme That Causes Sudden Death Syndrome in Soybean

Subodh K. Srivastava, Xiaoqiu Huang, Hargeet K. Brar, Ahmad M. Fakhoury, Burton H. Bluhm, Madan K. Bhattacharyya

published 14 Jan 2014

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32 species validation of a new Illumina paired-end approach for the development of microsatellites

Stacey L. Lance, Cara N. Love, Schyler O. Nunziata, Jason R. O’Bryhim, David E. Scott, R. Wesley Flynn, Kenneth L. Jones

published 28 Nov 2013

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Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows

Lingling Wang, Ayat Hatem, Umit V. Catalyurek, Mark Morrison, Zhongtang Yu

published 05 Nov 2013

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NeSSM: A Next-Generation Sequencing Simulator for Metagenomics

Ben Jia, Liming Xuan, Kaiye Cai, Zhiqiang Hu, Liangxiao Ma, Chaochun Wei

published 04 Oct 2013

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Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere

Andrea R. Ottesen, Antonio Gonzalez, Rebecca Bell, Caroline Arce, Steven Rideout, Marc Allard, Peter Evans, Errol Strain, Steven Musser, Rob Knight, Eric Brown, James B. Pettengill

published 09 Sep 2013

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Surprising Prokaryotic and Eukaryotic Diversity, Community Structure and Biogeography of Ethiopian Soda Lakes

Anders Lanzén, Addis Simachew, Amare Gessesse, Dominika Chmolowska, Inge Jonassen, Lise Øvreås

published 30 Aug 2013

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A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

A. Murat Eren, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin

published 17 Jun 2013

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Copy Number Change of the NDM-1 Sequence in a Multidrug-Resistant Klebsiella pneumoniae Clinical Isolate

Tzu-Wen Huang, Te-Li Chen, Ying-Tsong Chen, Tsai-Ling Lauderdale, Tsai-Lien Liao, Yi-Tzu Lee, Chien-Pei Chen, Yen-Ming Liu, Ann-Chi Lin, Ya-Hui Chang, Keh-Ming Wu, Ralph Kirby, Jui-Fen Lai, Mei-Chen Tan, Leung-Kei Siu, Chung-Ming Chang, Chang-Phone Fung, Shih-Feng Tsai

published 29 Apr 2013

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Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms

Layla Farage Martins, Luciana Principal Antunes, Renata C. Pascon, Julio Cezar Franco de Oliveira, Luciano A. Digiampietri, Deibs Barbosa, Bruno Malveira Peixoto, Marcelo A. Vallim, Cristina Viana-Niero, Eric H. Ostroski, Guilherme P. Telles, Zanoni Dias, João Batista da Cruz, Luiz Juliano, Sergio Verjovski-Almeida, Aline Maria da Silva, João Carlos Setubal

published 24 Apr 2013

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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

published 22 Apr 2013

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Enhanced De Novo Assembly of High Throughput Pyrosequencing Data Using Whole Genome Mapping

Fatma Onmus-Leone, Jun Hang, Robert J. Clifford, Yu Yang, Matthew C. Riley, Robert A. Kuschner, Paige E. Waterman, Emil P. Lesho

published 17 Apr 2013

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