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Shotgun sequencing

Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere

Andrea R. Ottesen, Antonio Gonzalez, Rebecca Bell, Caroline Arce, Steven Rideout, Marc Allard, Peter Evans, Errol Strain, Steven Musser, Rob Knight, Eric Brown, James B. Pettengill

published 09 Sep 2013

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Surprising Prokaryotic and Eukaryotic Diversity, Community Structure and Biogeography of Ethiopian Soda Lakes

Anders Lanzén, Addis Simachew, Amare Gessesse, Dominika Chmolowska, Inge Jonassen, Lise Øvreås

published 30 Aug 2013

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A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

A. Murat Eren, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin

published 17 Jun 2013

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Copy Number Change of the NDM-1 Sequence in a Multidrug-Resistant Klebsiella pneumoniae Clinical Isolate

Tzu-Wen Huang, Te-Li Chen, Ying-Tsong Chen, Tsai-Ling Lauderdale, Tsai-Lien Liao, Yi-Tzu Lee, Chien-Pei Chen, Yen-Ming Liu, Ann-Chi Lin, Ya-Hui Chang, Keh-Ming Wu, Ralph Kirby, Jui-Fen Lai, Mei-Chen Tan, Leung-Kei Siu, Chung-Ming Chang, Chang-Phone Fung, Shih-Feng Tsai

published 29 Apr 2013

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Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms

Layla Farage Martins, Luciana Principal Antunes, Renata C. Pascon, Julio Cezar Franco de Oliveira, Luciano A. Digiampietri, Deibs Barbosa, Bruno Malveira Peixoto, Marcelo A. Vallim, Cristina Viana-Niero, Eric H. Ostroski, Guilherme P. Telles, Zanoni Dias, João Batista da Cruz, Luiz Juliano, Sergio Verjovski-Almeida, Aline Maria da Silva, João Carlos Setubal

published 24 Apr 2013

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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

published 22 Apr 2013

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Enhanced De Novo Assembly of High Throughput Pyrosequencing Data Using Whole Genome Mapping

Fatma Onmus-Leone, Jun Hang, Robert J. Clifford, Yu Yang, Matthew C. Riley, Robert A. Kuschner, Paige E. Waterman, Emil P. Lesho

published 17 Apr 2013

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Noninvasive Prenatal Molecular Karyotyping from Maternal Plasma

Stephanie C. Y. Yu, Peiyong Jiang, Kwong W. Choy, Kwan Chee Allen Chan, Hye-Sung Won, Wing C. Leung, Elizabeth T. Lau, Mary H. Y. Tang, Tak Y. Leung, Yuk Ming Dennis Lo, Rossa W. K. Chiu

published 17 Apr 2013

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Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, Andreas Wilm, Christophe Lay, Eliza Xin Pei Ho, Louie Low, Martin Lloyd Hibberd, Niranjan Nagarajan

published 08 Apr 2013

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Mitochondrial Phylogenomics of Modern and Ancient Equids

Julia T. Vilstrup, Andaine Seguin-Orlando, Mathias Stiller, Aurelien Ginolhac, Maanasa Raghavan, Sandra C. A. Nielsen, Jacobo Weinstock, Duane Froese, Sergei K. Vasiliev, Nikolai D. Ovodov, Joel Clary, Kristofer M. Helgen, Robert C. Fleischer, Alan Cooper, Beth Shapiro, Ludovic Orlando

published 20 Feb 2013

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Microsatellites for Next-Generation Ecologists: A Post-Sequencing Bioinformatics Pipeline

Iria Fernandez-Silva, Jonathan Whitney, Benjamin Wainwright, Kimberly R. Andrews, Heather Ylitalo-Ward, Brian W. Bowen, Robert J. Toonen, Erica Goetze, Stephen A. Karl

published 12 Feb 2013

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OTU Analysis Using Metagenomic Shotgun Sequencing Data

Xiaolin Hao, Ting Chen

published 26 Nov 2012

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Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant

Reeta Sharma, Benoit Goossens, Célia Kun-Rodrigues, Tatiana Teixeira, Nurzhafarina Othman, Jason Q. Boone, Nathaniel K. Jue, Craig Obergfell, Rachel J. O'Neill, Lounès Chikhi

published 21 Nov 2012

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