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Shotgun sequencing

Next-Generation Mitogenomics: A Comparison of Approaches Applied to Caecilian Amphibian Phylogeny

Simon T. Maddock, Andrew G. Briscoe, Mark Wilkinson, Andrea Waeschenbach, Diego San Mauro, Julia J. Day, D. Tim J. Littlewood, Peter G. Foster, Ronald A. Nussbaum, David J. Gower

published 09 Jun 2016

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Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

Emily Vogtmann, Xing Hua, Georg Zeller, Shinichi Sunagawa, Anita Y. Voigt, Rajna Hercog, James J. Goedert, Jianxin Shi, Peer Bork, Rashmi Sinha

published 12 May 2016

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Comparison of Methods to Identify Pathogens and Associated Virulence Functional Genes in Biosolids from Two Different Wastewater Treatment Facilities in Canada

Etienne Yergeau, Luke Masson, Miria Elias, Shurong Xiang, Ewa Madey, Hongsheng Huang, Brian Brooks, Lee A. Beaudette

published 18 Apr 2016

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Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens

Tomasz Suchan, Camille Pitteloud, Nadezhda S. Gerasimova, Anna Kostikova, Sarah Schmid, Nils Arrigo, Mila Pajkovic, Michał Ronikier, Nadir Alvarez

published 21 Mar 2016

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Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, Roy D. Sleator, Aisling O’ Driscoll, Catherine Stanton, Paul D. Cotter, Marcus J. Claesson

published 05 Feb 2016

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Shotgun Metagenomic Sequencing Reveals Functional Genes and Microbiome Associated with Bovine Digital Dermatitis

Martin Zinicola, Hazel Higgins, Svetlana Lima, Vinicius Machado, Charles Guard, Rodrigo Bicalho

published 20 Jul 2015

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Construction of High-Density Genetic Map in Barley through Restriction-Site Associated DNA Sequencing

Gaofeng Zhou, Qisen Zhang, Xiao-qi Zhang, Cong Tan, Chengdao Li

published 16 Jul 2015

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Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone

Ron Pinhasi, Daniel Fernandes, Kendra Sirak, Mario Novak, Sarah Connell, Songül Alpaslan-Roodenberg, Fokke Gerritsen, Vyacheslav Moiseyev, Andrey Gromov, Pál Raczky, Alexandra Anders, Michael Pietrusewsky, Gary Rollefson, Marija Jovanovic, Hiep Trinhhoang, Guy Bar-Oz, Marc Oxenham, Hirofumi Matsumura, Michael Hofreiter

published 18 Jun 2015

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Cloning, Sequencing, and Expression of Selenoprotein Transcripts in the Turkey (Meleagris gallopavo)

Roger A. Sunde, Gavin R. Sunde, Colin M. Sunde, Milton L. Sunde, Jacqueline K. Evenson

published 12 Jun 2015

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Screening Currency Notes for Microbial Pathogens and Antibiotic Resistance Genes Using a Shotgun Metagenomic Approach

Saakshi Jalali, Samantha Kohli, Chitra Latka, Sugandha Bhatia, Shamsudheen Karuthedath Vellarikal, Sridhar Sivasubbu, Vinod Scaria, Srinivasan Ramachandran

published 02 Jun 2015

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Identification and Functional Analysis of Genome Mutations in a Fluoride-Resistant Streptococcus mutans Strain

Ying Liao, Jianwei Chen, Bernd Willem Brandt, Yuanfang Zhu, Jiyao Li, Cor van Loveren, Dong Mei Deng

published 09 Apr 2015

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Target-Dependent Enrichment of Virions Determines the Reduction of High-Throughput Sequencing in Virus Discovery

Randi Holm Jensen, Sarah Mollerup, Tobias Mourier, Thomas Arn Hansen, Helena Fridholm, Lars Peter Nielsen, Eske Willerslev, Anders Johannes Hansen, Lasse Vinner

published 08 Apr 2015

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Altered Microbiomes in Bovine Digital Dermatitis Lesions, and the Gut as a Pathogen Reservoir

Martin Zinicola, Fabio Lima, Svetlana Lima, Vinicius Machado, Marilia Gomez, Dörte Döpfer, Charles Guard, Rodrigo Bicalho

published 17 Mar 2015

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