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Shotgun sequencing

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, Brian L. Schmidt, Donna G. Albertson, Neil J. Poloso, Karim Dabbagh, Todd Z. DeSantis

published 07 Nov 2016

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Breaking Lander-Waterman’s Coverage Bound

Damoun Nashta-ali, Seyed Abolfazl Motahari, Babak Hosseinkhalaj

published 02 Nov 2016

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Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples

Philippe Chouvarine, Lutz Wiehlmann, Patricia Moran Losada, David S. DeLuca, Burkhard Tümmler

published 19 Oct 2016

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A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice

Alissa Mittnik, Chuan-Chao Wang, Jiří Svoboda, Johannes Krause

published 05 Oct 2016

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Microbial Characterization of Qatari Barchan Sand Dunes

Sara Abdul Majid, Michael F. Graw, Aspassia D. Chatziefthimiou, Hanh Nguyen, Renee Richer, Michel Louge, Ali A. Sultan, Patrick Schloss, Anthony G. Hay

published 21 Sep 2016

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Diversity of Gut Microbiota Metabolic Pathways in 10 Pairs of Chinese Infant Twins

Shaoming Zhou, Ruihuan Xu, Fusheng He, Jiaxiu Zhou, Yan Wang, Jianli Zhou, Mingbang Wang, Wenhao Zhou

published 01 Sep 2016

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Longitudinal Metagenomic Analysis of Hospital Air Identifies Clinically Relevant Microbes

Paula King, Long K. Pham, Shannon Waltz, Dan Sphar, Robert T. Yamamoto, Douglas Conrad, Randy Taplitz, Francesca Torriani, R. Allyn Forsyth

published 02 Aug 2016

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Next-Generation Mitogenomics: A Comparison of Approaches Applied to Caecilian Amphibian Phylogeny

Simon T. Maddock, Andrew G. Briscoe, Mark Wilkinson, Andrea Waeschenbach, Diego San Mauro, Julia J. Day, D. Tim J. Littlewood, Peter G. Foster, Ronald A. Nussbaum, David J. Gower

published 09 Jun 2016

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Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

Emily Vogtmann, Xing Hua, Georg Zeller, Shinichi Sunagawa, Anita Y. Voigt, Rajna Hercog, James J. Goedert, Jianxin Shi, Peer Bork, Rashmi Sinha

published 12 May 2016

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Comparison of Methods to Identify Pathogens and Associated Virulence Functional Genes in Biosolids from Two Different Wastewater Treatment Facilities in Canada

Etienne Yergeau, Luke Masson, Miria Elias, Shurong Xiang, Ewa Madey, Hongsheng Huang, Brian Brooks, Lee A. Beaudette

published 18 Apr 2016

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Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens

Tomasz Suchan, Camille Pitteloud, Nadezhda S. Gerasimova, Anna Kostikova, Sarah Schmid, Nils Arrigo, Mila Pajkovic, Michał Ronikier, Nadir Alvarez

published 21 Mar 2016

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Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, Roy D. Sleator, Aisling O’ Driscoll, Catherine Stanton, Paul D. Cotter, Marcus J. Claesson

published 05 Feb 2016

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Shotgun Metagenomic Sequencing Reveals Functional Genes and Microbiome Associated with Bovine Digital Dermatitis

Martin Zinicola, Hazel Higgins, Svetlana Lima, Vinicius Machado, Charles Guard, Rodrigo Bicalho

published 20 Jul 2015

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