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Shotgun sequencing

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, Ekaterina Tkachenko, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth L. Hohmann, Ami S. Bhatt

published 21 Aug 2017

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A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis

Tomomasa Matsuyama, Motoshige Yasuike, Atushi Fujiwara, Yoji Nakamura, Tomokazu Takano, Takeshi Takeuchi, Noriyuki Satoh, Yoshikazu Adachi, Yasushi Tsuchihashi, Hideo Aoki, Kazushi Odawara, Shunsuke Iwanaga, Jun Kurita, Takashi Kamaishi, Chihaya Nakayasu

published 03 Aug 2017

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Microbiome overview in swine lungs

Franciele Maboni Siqueira, Esteban Pérez-Wohlfeil, Fabíola Marques Carvalho, Oswaldo Trelles, Irene Silveira Schrank, Ana Tereza Ribeiro Vasconcelos, Arnaldo Zaha

published 18 Jul 2017

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Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, Claudia Schütte, Nadine Stefanczyk, Ronny Brandt, Frank R. Blattner, Dietmar Quandt

published 02 Jun 2017

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Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

Julia M. Maritz, Steven A. Sullivan, Robert J. Prill, Emre Aksoy, Paul Scheid, Jane M. Carlton

published 06 Apr 2017

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The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred

Umer Zeeshan Ijaz, Christopher Quince, Laura Hanske, Nick Loman, Szymon T. Calus, Martin Bertz, Christine A. Edwards, Daniel R. Gaya, Richard Hansen, Paraic McGrogan, Richard K. Russell, Konstantinos Gerasimidis

published 21 Feb 2017

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Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing

Susan R. Leonard, Mark K. Mammel, David W. Lacher, Christopher A. Elkins

published 08 Dec 2016

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Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, Brian L. Schmidt, Donna G. Albertson, Neil J. Poloso, Karim Dabbagh, Todd Z. DeSantis

published 07 Nov 2016

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Breaking Lander-Waterman’s Coverage Bound

Damoun Nashta-ali, Seyed Abolfazl Motahari, Babak Hosseinkhalaj

published 02 Nov 2016

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Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples

Philippe Chouvarine, Lutz Wiehlmann, Patricia Moran Losada, David S. DeLuca, Burkhard Tümmler

published 19 Oct 2016

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A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice

Alissa Mittnik, Chuan-Chao Wang, Jiří Svoboda, Johannes Krause

published 05 Oct 2016

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Microbial Characterization of Qatari Barchan Sand Dunes

Sara Abdul Majid, Michael F. Graw, Aspassia D. Chatziefthimiou, Hanh Nguyen, Renee Richer, Michel Louge, Ali A. Sultan, Patrick Schloss, Anthony G. Hay

published 21 Sep 2016

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Diversity of Gut Microbiota Metabolic Pathways in 10 Pairs of Chinese Infant Twins

Shaoming Zhou, Ruihuan Xu, Fusheng He, Jiaxiu Zhou, Yan Wang, Jianli Zhou, Mingbang Wang, Wenhao Zhou

published 01 Sep 2016

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