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Shotgun sequencing

California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

Lindsey Jacobs, Benjamin H. McMahon, [ ... ], Jeanne M. Fair

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, [ ... ], Gail L. Rosen

Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm

Korin Eckstrom, John W. Barlow

Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems

Schuyler D. Smith, Phillip Colgan, [ ... ], Adina Howe

Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, [ ... ], Dirk Repsilber

Parthenogenesis in a captive Asian water dragon (Physignathus cocincinus) identified with novel microsatellites

Kyle L. Miller, Susette Castañeda Rico, [ ... ], Robert C. Fleischer

Detection of critical antibiotic resistance genes through routine microbiome surveillance

Zachary M. Burcham, Carl J. Schmidt, [ ... ], Heather R. Jordan

Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits

Zhumei Ren, Carol D. von Dohlen, [ ... ], Jun Wen

Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature

Samuele Bovo, Anisa Ribani, [ ... ], Luca Fontanesi

Estimating genetic kin relationships in prehistoric populations

Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther

Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection

Chie Owa, Matthew Poulin, Liying Yan, Toshi Shioda

BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, [ ... ], Ami S. Bhatt

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