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Shotgun sequencing

Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber

published 17 Sep 2019

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Parthenogenesis in a captive Asian water dragon (Physignathus cocincinus) identified with novel microsatellites

Kyle L. Miller, Susette Castañeda Rico, Carly R. Muletz-Wolz, Michael G. Campana, Nancy McInerney, Lauren Augustine, Celine Frere, Alan M. Peters, Robert C. Fleischer

published 05 Jun 2019

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Detection of critical antibiotic resistance genes through routine microbiome surveillance

Zachary M. Burcham, Carl J. Schmidt, Jennifer L. Pechal, Christopher P. Brooks, Jason W. Rosch, M. Eric Benbow, Heather R. Jordan

published 14 Mar 2019

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Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits

Zhumei Ren, Carol D. von Dohlen, A. J. Harris, Rebecca B. Dikow, Xu Su, Jun Wen

published 28 Feb 2019

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Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature

Samuele Bovo, Anisa Ribani, Valerio Joe Utzeri, Giuseppina Schiavo, Francesca Bertolini, Luca Fontanesi

published 31 Oct 2018

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Estimating genetic kin relationships in prehistoric populations

Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther

published 23 Apr 2018

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Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection

Chie Owa, Matthew Poulin, Liying Yan, Toshi Shioda

published 08 Feb 2018

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BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

published 26 Oct 2017

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Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, Ekaterina Tkachenko, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth L. Hohmann, Ami S. Bhatt

published 21 Aug 2017

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A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis

Tomomasa Matsuyama, Motoshige Yasuike, Atushi Fujiwara, Yoji Nakamura, Tomokazu Takano, Takeshi Takeuchi, Noriyuki Satoh, Yoshikazu Adachi, Yasushi Tsuchihashi, Hideo Aoki, Kazushi Odawara, Shunsuke Iwanaga, Jun Kurita, Takashi Kamaishi, Chihaya Nakayasu

published 03 Aug 2017

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Microbiome overview in swine lungs

Franciele Maboni Siqueira, Esteban Pérez-Wohlfeil, Fabíola Marques Carvalho, Oswaldo Trelles, Irene Silveira Schrank, Ana Tereza Ribeiro Vasconcelos, Arnaldo Zaha

published 18 Jul 2017

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Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, Claudia Schütte, Nadine Stefanczyk, Ronny Brandt, Frank R. Blattner, Dietmar Quandt

published 02 Jun 2017

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Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

Julia M. Maritz, Steven A. Sullivan, Robert J. Prill, Emre Aksoy, Paul Scheid, Jane M. Carlton

published 06 Apr 2017

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