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Shotgun sequencing

Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing

Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri

published 09 Jan 2020

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California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

Lindsey Jacobs, Benjamin H. McMahon, Joel Berendzen, Jonathan Longmire, Cheryl Gleasner, Nicolas W. Hengartner, Momchilo Vuyisich, Judith R. Cohn, Marti Jenkins, Andrew W. Bartlow, Jeanne M. Fair

published 11 Dec 2019

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Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao, Gideon Simpson, Michael P. O’Connor, Gail L. Rosen

published 11 Dec 2019

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Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm

Korin Eckstrom, John W. Barlow

published 21 Nov 2019

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Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems

Schuyler D. Smith, Phillip Colgan, Fan Yang, Elizabeth L. Rieke, Michelle L. Soupir, Thomas B. Moorman, Heather K. Allen, Adina Howe

published 17 Sep 2019

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Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber

published 17 Sep 2019

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Parthenogenesis in a captive Asian water dragon (Physignathus cocincinus) identified with novel microsatellites

Kyle L. Miller, Susette Castañeda Rico, Carly R. Muletz-Wolz, Michael G. Campana, Nancy McInerney, Lauren Augustine, Celine Frere, Alan M. Peters, Robert C. Fleischer

published 05 Jun 2019

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Detection of critical antibiotic resistance genes through routine microbiome surveillance

Zachary M. Burcham, Carl J. Schmidt, Jennifer L. Pechal, Christopher P. Brooks, Jason W. Rosch, M. Eric Benbow, Heather R. Jordan

published 14 Mar 2019

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Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits

Zhumei Ren, Carol D. von Dohlen, A. J. Harris, Rebecca B. Dikow, Xu Su, Jun Wen

published 28 Feb 2019

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Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature

Samuele Bovo, Anisa Ribani, Valerio Joe Utzeri, Giuseppina Schiavo, Francesca Bertolini, Luca Fontanesi

published 31 Oct 2018

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Estimating genetic kin relationships in prehistoric populations

Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther

published 23 Apr 2018

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Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection

Chie Owa, Matthew Poulin, Liying Yan, Toshi Shioda

published 08 Feb 2018

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BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

published 26 Oct 2017

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