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Shotgun sequencing

Detection of critical antibiotic resistance genes through routine microbiome surveillance

Zachary M. Burcham, Carl J. Schmidt, Jennifer L. Pechal, Christopher P. Brooks, Jason W. Rosch, M. Eric Benbow, Heather R. Jordan

published 14 Mar 2019

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Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits

Zhumei Ren, Carol D. von Dohlen, A. J. Harris, Rebecca B. Dikow, Xu Su, Jun Wen

published 28 Feb 2019

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Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature

Samuele Bovo, Anisa Ribani, Valerio Joe Utzeri, Giuseppina Schiavo, Francesca Bertolini, Luca Fontanesi

published 31 Oct 2018

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Estimating genetic kin relationships in prehistoric populations

Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther

published 23 Apr 2018

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Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection

Chie Owa, Matthew Poulin, Liying Yan, Toshi Shioda

published 08 Feb 2018

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BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

published 26 Oct 2017

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Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, Ekaterina Tkachenko, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth L. Hohmann, Ami S. Bhatt

published 21 Aug 2017

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A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis

Tomomasa Matsuyama, Motoshige Yasuike, Atushi Fujiwara, Yoji Nakamura, Tomokazu Takano, Takeshi Takeuchi, Noriyuki Satoh, Yoshikazu Adachi, Yasushi Tsuchihashi, Hideo Aoki, Kazushi Odawara, Shunsuke Iwanaga, Jun Kurita, Takashi Kamaishi, Chihaya Nakayasu

published 03 Aug 2017

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Microbiome overview in swine lungs

Franciele Maboni Siqueira, Esteban Pérez-Wohlfeil, Fabíola Marques Carvalho, Oswaldo Trelles, Irene Silveira Schrank, Ana Tereza Ribeiro Vasconcelos, Arnaldo Zaha

published 18 Jul 2017

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Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, Claudia Schütte, Nadine Stefanczyk, Ronny Brandt, Frank R. Blattner, Dietmar Quandt

published 02 Jun 2017

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Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

Julia M. Maritz, Steven A. Sullivan, Robert J. Prill, Emre Aksoy, Paul Scheid, Jane M. Carlton

published 06 Apr 2017

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The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred

Umer Zeeshan Ijaz, Christopher Quince, Laura Hanske, Nick Loman, Szymon T. Calus, Martin Bertz, Christine A. Edwards, Daniel R. Gaya, Richard Hansen, Paraic McGrogan, Richard K. Russell, Konstantinos Gerasimidis

published 21 Feb 2017

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Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing

Susan R. Leonard, Mark K. Mammel, David W. Lacher, Christopher A. Elkins

published 08 Dec 2016

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